Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G148100.2 | Wheat | nucleus | 98.84 | 90.77 |
| TraesCS1A01G151100.1 | Wheat | nucleus | 98.84 | 90.77 |
| Zm00001d045376_P001 | Maize | cytosol | 31.64 | 90.61 |
| TraesCS1B01G168700.3 | Wheat | nucleus | 98.62 | 90.4 |
| GSMUA_Achr8P12550_001 | Banana | cytosol | 42.22 | 87.69 |
| Os10t0471350-01 | Rice | nucleus | 91.11 | 86.27 |
| Zm00001d019056_P001 | Maize | nucleus | 17.78 | 84.0 |
| KXG38358 | Sorghum | nucleus | 88.36 | 80.6 |
| Zm00001d032735_P001 | Maize | plastid | 88.04 | 80.46 |
| PGSC0003DMT400055058 | Potato | nucleus | 69.74 | 77.17 |
| KRH72171 | Soybean | nucleus | 70.69 | 74.22 |
| VIT_08s0032g01230.t01 | Wine grape | nucleus, plastid | 76.3 | 70.34 |
| Solyc01g006970.2.1 | Tomato | nucleus | 75.98 | 69.64 |
| Bra023043.1-P | Field mustard | nucleus | 73.23 | 69.55 |
| KRH32860 | Soybean | mitochondrion, nucleus, plastid | 75.03 | 68.83 |
| CDX79642 | Canola | nucleus, vacuole | 73.44 | 67.05 |
| CDX84588 | Canola | plastid, vacuole | 73.12 | 66.76 |
| AT2G35920.3 | Thale cress | plastid | 72.49 | 66.7 |
| GSMUA_Achr8P12540_001 | Banana | nucleus | 34.6 | 59.24 |
| HORVU5Hr1G094990.5 | Barley | endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 47.94 | 39.39 |
| HORVU3Hr1G002800.8 | Barley | mitochondrion | 47.41 | 35.93 |
| HORVU4Hr1G052730.3 | Barley | cytosol | 26.24 | 34.4 |
| HORVU3Hr1G028550.17 | Barley | cytosol | 21.9 | 29.7 |
| HORVU7Hr1G032080.3 | Barley | plastid | 22.96 | 26.5 |
| HORVU3Hr1G074660.7 | Barley | plastid | 34.18 | 25.35 |
| HORVU1Hr1G056370.1 | Barley | nucleus | 26.56 | 23.61 |
| HORVU1Hr1G056400.1 | Barley | nucleus | 26.56 | 23.57 |
| HORVU4Hr1G088270.17 | Barley | mitochondrion | 26.03 | 22.78 |
| HORVU0Hr1G007860.1 | Barley | nucleus | 28.36 | 21.58 |
| HORVU2Hr1G047870.2 | Barley | nucleus | 25.08 | 18.76 |
| HORVU0Hr1G039590.6 | Barley | nucleus | 23.07 | 16.94 |
| HORVU5Hr1G019730.1 | Barley | nucleus, plastid | 22.86 | 12.65 |
| HORVU2Hr1G030040.17 | Barley | nucleus | 23.07 | 11.95 |
Protein Annotations
| Gene3D:1.20.120.1080 | Gene3D:3.40.50.300 | MapMan:35.1 | UniProt:A0A287F843 | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DNA/RNA_helicase_DEAH_CS |
| InterPro:DUF1605 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004386 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 | EnsemblPlantsGene:HORVU1Hr1G039880 | EnsemblPlants:HORVU1Hr1G039880.1 | InterPro:Helicase-assoc_dom |
| InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:P-loop_NTPase | PFAM:PF00270 |
| PFAM:PF00271 | PFAM:PF04408 | PFAM:PF07717 | ScanProsite:PS00690 | PFscan:PS51192 | PFscan:PS51194 |
| PANTHER:PTHR18934 | PANTHER:PTHR18934:SF191 | SMART:SM00487 | SMART:SM00490 | SMART:SM00847 | SUPFAM:SSF52540 |
| UniParc:UPI000B48281C | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chrchr1H:-:281470313..281481338
Molecular Weight (calculated)
105988.0 Da
IEP (calculated)
7.751
GRAVY (calculated)
-0.244
Length
945 amino acids
Sequence
(BLAST)
(BLAST)
001: WRAERLRQMA GEVEKVDEHE WWNTIGQLRE GSQQELVVKK NFGRDGQNTL ADIAQRHGLY FNAYNKGKTL VFSKVPLPDY RADLDERHGS SQNEIKMSNE
101: TERRVENLLS RAQSNNNASA STSTVSMRQS LPSTSTSVAE STTYVDKQKL SFQLRDMQRS KKMMPSARSM QSFREKLPAF KAREEFLKAV AANQVLVISG
201: ETGCGKTTQL PQFILEEEID NLRGADCSII CTQPRRISAI SVAARVGSER GEELGETVGY QIRLESKRST QTRLLFCTTG VLLRKLVQEP DLVGVSYLLV
301: DEIHERGMNE DFLIIILRDL LPRRPDLRLV LMSATINAEL FSKYFGDAPI MHIPGFTFPV AELFLEDILE KTQYKIKSER DNFQGNSRKK RLASVKNDPL
401: ADVFEDVDIN KEYGNYSITT RQSLEAWSVT ELDLSLVEGT IEYICRHEGE GAILVFLTGW DEISKLLDKI KGNNLLGNSN KFLVLPLHGS MPTVNQCEIF
501: DRAPANMRKI VLATNIAESS ITIDDVVYVI DCGKAKETSY DALNKLACLL PSWISKASAH QRRGRAGRVQ PGVCYRLYPK VIHNAMPQFQ LPEILRTPLQ
601: ELCLTIKSLQ LGAVASFLAK SLQPPDPLSV KNAIELLKTI GALDDLEELT YLGRHLCTLP LDPNIGKMLL IGSVFQCLDP ALTIAAALAY RNPFVLPIDR
701: KEEADAVKRS FAGDSCSDHI ALLKAFEAWK EAKCSGRERS FCWENFLSPM TLKMMDDMRN QFFDLLSDIG FVSKTRGVKA YNHYGKDLEM VSAVLCAGLY
801: PSVIQCKRRG KRTAFYTKDV GKVDIHPSSV NAGVQQFPLP YLVYSEKVKT ASIYVRDSTN ISDYALLLFG GSLSPSNTGE GIEMLGGYLH FSAPKRIIEL
901: IQRLRGELDK LLQRKIEEPA LDIFSEGKGV VAAAVELLHS QNIYH
101: TERRVENLLS RAQSNNNASA STSTVSMRQS LPSTSTSVAE STTYVDKQKL SFQLRDMQRS KKMMPSARSM QSFREKLPAF KAREEFLKAV AANQVLVISG
201: ETGCGKTTQL PQFILEEEID NLRGADCSII CTQPRRISAI SVAARVGSER GEELGETVGY QIRLESKRST QTRLLFCTTG VLLRKLVQEP DLVGVSYLLV
301: DEIHERGMNE DFLIIILRDL LPRRPDLRLV LMSATINAEL FSKYFGDAPI MHIPGFTFPV AELFLEDILE KTQYKIKSER DNFQGNSRKK RLASVKNDPL
401: ADVFEDVDIN KEYGNYSITT RQSLEAWSVT ELDLSLVEGT IEYICRHEGE GAILVFLTGW DEISKLLDKI KGNNLLGNSN KFLVLPLHGS MPTVNQCEIF
501: DRAPANMRKI VLATNIAESS ITIDDVVYVI DCGKAKETSY DALNKLACLL PSWISKASAH QRRGRAGRVQ PGVCYRLYPK VIHNAMPQFQ LPEILRTPLQ
601: ELCLTIKSLQ LGAVASFLAK SLQPPDPLSV KNAIELLKTI GALDDLEELT YLGRHLCTLP LDPNIGKMLL IGSVFQCLDP ALTIAAALAY RNPFVLPIDR
701: KEEADAVKRS FAGDSCSDHI ALLKAFEAWK EAKCSGRERS FCWENFLSPM TLKMMDDMRN QFFDLLSDIG FVSKTRGVKA YNHYGKDLEM VSAVLCAGLY
801: PSVIQCKRRG KRTAFYTKDV GKVDIHPSSV NAGVQQFPLP YLVYSEKVKT ASIYVRDSTN ISDYALLLFG GSLSPSNTGE GIEMLGGYLH FSAPKRIIEL
901: IQRLRGELDK LLQRKIEEPA LDIFSEGKGV VAAAVELLHS QNIYH
001: MPPHGPNSQG GRRGGGHSSG RRGGRGGGGR GGGGGGRGEQ RWWDPVWRAE RLRQQQAEME VLDENEWWNK IEQWKTGGEQ EMLIKRNFSR GDQQTLSDMA
101: LQMGLYFHAY NKGKALVVSK VPLPDYRADL DERHGSTQKE IKMSTETERK LGSLLKTTQE SGSSGASASA FNDQQDRTST LGLKRPDSAS KLPDSLEKEK
201: FSFALKERQE KLKATESVKA LKAFREKLPA FKMKEEFLNS VSQNQVLVVS GETGCGKTTQ LPQFILEEEI SSLRGADCNI ICTQPRRISA ISVASRISAE
301: RGESIGESVG YQIRLESKRS DQTRLLFCTT GVLLRRLIED PNLTNVSHLL VDEIHERGMN EDFLLIILRD LLPRRPDLRL ILMSATINAD MFSTYFGNSP
401: TMHIPGFTFP VAELFLEDVL EKSRYNIKSS DSGNYQGSSR GRRRESESKK DDLTTLFEDI DINSHYKSYS SATRNSLEAW SGAQIDVDLV EATIEHICRL
501: EGGGAILVFL TGWDEISKLL EKINMNNFLG DSSKFLVLPL HGSMPTVNQR EIFDRPPPNK RKIVLATNIA ESSITIDDVV YVVDCGKAKE TSYDALNKVA
601: CLLPSWISKA SAHQRRGRAG RVQAGVCYRL YPKVIYDAFP QYQLPEIIRT PLQELCLHIK SLQVGSIGSF LAKALQPPDA LAVENAIELL KTIGALNDVE
701: ELTPLGRHLC TLPVDPNIGK MLLIGAIFQC VNPALTIAAA LAYRSPFVLP LNRKEEADEA KRYFAGDSCS DHIALLKAYE GYRDAKRGGN EKDFCWQNFL
801: SPVTLRMMED MRNQFLDLLS DIGFVDKSKP NAYNQYSYDM EMISAVLCAG LYPNVVQCKR RGKRTAFYTK ELGKVDIHPG SVNARVNLFS LPYLVYSEKV
901: KTTSVYIRDS TNISDYALLM FGGNLIPSKT GEGIEMLGGY LHFSASKNIL ELIQRLRGEV DKLLNKKIED PSLDITVEGK GVVSAVVELL RSQKH
101: LQMGLYFHAY NKGKALVVSK VPLPDYRADL DERHGSTQKE IKMSTETERK LGSLLKTTQE SGSSGASASA FNDQQDRTST LGLKRPDSAS KLPDSLEKEK
201: FSFALKERQE KLKATESVKA LKAFREKLPA FKMKEEFLNS VSQNQVLVVS GETGCGKTTQ LPQFILEEEI SSLRGADCNI ICTQPRRISA ISVASRISAE
301: RGESIGESVG YQIRLESKRS DQTRLLFCTT GVLLRRLIED PNLTNVSHLL VDEIHERGMN EDFLLIILRD LLPRRPDLRL ILMSATINAD MFSTYFGNSP
401: TMHIPGFTFP VAELFLEDVL EKSRYNIKSS DSGNYQGSSR GRRRESESKK DDLTTLFEDI DINSHYKSYS SATRNSLEAW SGAQIDVDLV EATIEHICRL
501: EGGGAILVFL TGWDEISKLL EKINMNNFLG DSSKFLVLPL HGSMPTVNQR EIFDRPPPNK RKIVLATNIA ESSITIDDVV YVVDCGKAKE TSYDALNKVA
601: CLLPSWISKA SAHQRRGRAG RVQAGVCYRL YPKVIYDAFP QYQLPEIIRT PLQELCLHIK SLQVGSIGSF LAKALQPPDA LAVENAIELL KTIGALNDVE
701: ELTPLGRHLC TLPVDPNIGK MLLIGAIFQC VNPALTIAAA LAYRSPFVLP LNRKEEADEA KRYFAGDSCS DHIALLKAYE GYRDAKRGGN EKDFCWQNFL
801: SPVTLRMMED MRNQFLDLLS DIGFVDKSKP NAYNQYSYDM EMISAVLCAG LYPNVVQCKR RGKRTAFYTK ELGKVDIHPG SVNARVNLFS LPYLVYSEKV
901: KTTSVYIRDS TNISDYALLM FGGNLIPSKT GEGIEMLGGY LHFSASKNIL ELIQRLRGEV DKLLNKKIED PSLDITVEGK GVVSAVVELL RSQKH
Arabidopsis Description
RNA helicase family protein [Source:TAIR;Acc:AT2G35920]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.