Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d019056_P001 | Maize | nucleus | 16.85 | 46.5 |
| Os10t0471350-01 | Rice | nucleus | 66.49 | 36.77 |
| TraesCS1B01G168700.3 | Wheat | nucleus | 65.04 | 34.82 |
| KXG38358 | Sorghum | nucleus | 65.22 | 34.75 |
| HORVU1Hr1G039880.1 | Barley | nucleus | 59.24 | 34.6 |
| TraesCS1D01G148100.2 | Wheat | nucleus | 64.31 | 34.5 |
| TraesCS1A01G151100.1 | Wheat | nucleus | 64.31 | 34.5 |
| Zm00001d032735_P001 | Maize | plastid | 64.31 | 34.33 |
| VIT_08s0032g01230.t01 | Wine grape | nucleus, plastid | 63.04 | 33.95 |
| KRH32860 | Soybean | mitochondrion, nucleus, plastid | 62.32 | 33.4 |
| Bra023043.1-P | Field mustard | nucleus | 59.96 | 33.27 |
| Solyc01g006970.2.1 | Tomato | nucleus | 61.23 | 32.78 |
| AT2G35920.3 | Thale cress | plastid | 60.69 | 32.62 |
| CDX84588 | Canola | plastid, vacuole | 60.33 | 32.17 |
| CDX79642 | Canola | nucleus, vacuole | 60.33 | 32.17 |
| KRH72171 | Soybean | nucleus | 49.09 | 30.11 |
| PGSC0003DMT400055058 | Potato | nucleus | 43.66 | 28.22 |
| Zm00001d045376_P001 | Maize | cytosol | 13.77 | 23.03 |
| GSMUA_Achr1P18470_001 | Banana | cytosol | 14.13 | 21.91 |
| GSMUA_Achr11P... | Banana | nucleus | 14.86 | 21.64 |
| GSMUA_Achr4P07530_001 | Banana | mitochondrion | 38.04 | 18.03 |
| GSMUA_Achr3P20920_001 | Banana | mitochondrion, nucleus | 36.05 | 15.91 |
| GSMUA_Achr4P23370_001 | Banana | nucleus | 17.75 | 13.07 |
| GSMUA_Achr3P12710_001 | Banana | nucleus | 16.85 | 12.81 |
| GSMUA_Achr5P02110_001 | Banana | mitochondrion | 24.28 | 11.9 |
| GSMUA_Achr2P20940_001 | Banana | nucleus | 14.31 | 11.77 |
| GSMUA_Achr6P17860_001 | Banana | nucleus | 28.26 | 10.96 |
| GSMUA_Achr3P24350_001 | Banana | endoplasmic reticulum, vacuole | 13.41 | 10.41 |
| GSMUA_Achr10P... | Banana | nucleus | 16.67 | 9.44 |
| GSMUA_Achr5P05110_001 | Banana | nucleus | 15.58 | 8.46 |
| GSMUA_Achr3P08220_001 | Banana | nucleus | 15.76 | 8.09 |
| GSMUA_Achr8P17640_001 | Banana | nucleus | 8.51 | 3.81 |
| GSMUA_Achr8P12550_001 | Banana | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr8P12540_001 | EnsemblPlants:GSMUA_Achr8T12540_001 | EnsemblPlantsGene:GSMUA_Achr8G12540_001 | InterPro:DNA/RNA_helicase_DEAH_CS | InterPro:Helicase_ATP-bd | InterPro:IPR014001 |
| InterPro:P-loop_NTPase | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF191 | PFscan:PS51192 | ScanProsite:PS00690 | SEG:seg |
| SMART:SM00487 | SUPFAM:SSF52540 | UniParc:UPI00029682F6 | UniProt:M0TPV7 | MapMan:35.1 | : |
Description
DEAD/DEAH box helicase domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G12540_001]
Coordinates
chr8:+:9347873..9357407
Molecular Weight (calculated)
62086.8 Da
IEP (calculated)
9.745
GRAVY (calculated)
-0.605
Length
552 amino acids
Sequence
(BLAST)
(BLAST)
001: MSYRPNYQGG RRGGRGGGRG GGRGDGGGGG GGGRGGGRGG GRGEQRWWDP QWRAERLRQM AGEVEKLDEN EWWSRIQQLK QGSQQELIVK RNFGRDGQNT
101: LANMAQNQGL YFHAYNKGKA LVFSKVPLPD YRADLDERHG STQKEIKMST ETERRVVSLL ARSKDISTQN SSTSTFTQAE KQPLSSVPIS RSESSSSFDT
201: MKEKFSFELR ELQNSKKASP STKAMLAFRE KLPAYKLKDE FLKAVADNQV LVVSGETGCG KTTQLPQFIL EQEIEHLRGA DCSIICTQPR RISAISVAAR
301: IASERGESLG ETVGYQIRLE AKRSEQTRLL FCTTGVLLRR LVSRSFRTCA WGMFSEAPPS QDHGSGMETT SKPLVAENMR TRPSHGLFVV KYMIIFFPVQ
401: ESDLAGVSHL LVDEIHERGI NEDFLIIILR DLLPRRPDLR LILMSATLNA DLFSRYFGNA PVIHIPGFTF PVAELFLEDI VEKTRYKIKH ELDNYQGNSR
501: RRRRQPSAKS DPLTEMFEDV DVDIQYKNYS FPTRQSLEAW DGGQLDLGLV RS
101: LANMAQNQGL YFHAYNKGKA LVFSKVPLPD YRADLDERHG STQKEIKMST ETERRVVSLL ARSKDISTQN SSTSTFTQAE KQPLSSVPIS RSESSSSFDT
201: MKEKFSFELR ELQNSKKASP STKAMLAFRE KLPAYKLKDE FLKAVADNQV LVVSGETGCG KTTQLPQFIL EQEIEHLRGA DCSIICTQPR RISAISVAAR
301: IASERGESLG ETVGYQIRLE AKRSEQTRLL FCTTGVLLRR LVSRSFRTCA WGMFSEAPPS QDHGSGMETT SKPLVAENMR TRPSHGLFVV KYMIIFFPVQ
401: ESDLAGVSHL LVDEIHERGI NEDFLIIILR DLLPRRPDLR LILMSATLNA DLFSRYFGNA PVIHIPGFTF PVAELFLEDI VEKTRYKIKH ELDNYQGNSR
501: RRRRQPSAKS DPLTEMFEDV DVDIQYKNYS FPTRQSLEAW DGGQLDLGLV RS
0001: MQQSLSCFST LRFLLPFSSK LSPLRPLFHT AAMPPHGPNS QGGRRGGGHS SGRRGGRGGG GRGGGGGGRG EQRWWDPVWR AERLRQQQAE MEVLDENEWW
0101: NKIEQWKTGG EQEMLIKRNF SRGDQQTLSD MALQMGLYFH AYNKGKALVV SKVPLPDYRA DLDERHGSTQ KEIKMSTETE RKLGSLLKTT QESGSSGASA
0201: SAFNDQQDRT STLGLKRPDS ASKLPDSLEK EKFSFALKER QEKLKATESV KALKAFREKL PAFKMKEEFL NSVSQNQVLV VSGETGCGKT TQLPQFILEE
0301: EISSLRGADC NIICTQPRRI SAISVASRIS AERGESIGES VGYQIRLESK RSDQTRLLFC TTGVLLRRLI EDPNLTNVSH LLVDEIHERG MNEDFLLIIL
0401: RDLLPRRPDL RLILMSATIN ADMFSTYFGN SPTMHIPGFT FPVAELFLED VLEKSRYNIK SSDSGNYQGS SRGRRRESES KKDDLTTLFE DIDINSHYKS
0501: YSSATRNSLE AWSGAQIDVD LVEATIEHIC RLEGGGAILV FLTGWDEISK LLEKINMNNF LGDSSKFLVL PLHGSMPTVN QREIFDRPPP NKRKIVLATN
0601: IAESSITIDD VVYVVDCGKA KETSYDALNK VACLLPSWIS KASAHQRRGR AGRVQAGVCY RLYPKVIYDA FPQYQLPEII RTPLQELCLH IKSLQVGSIG
0701: SFLAKALQPP DALAVENAIE LLKTIGALND VEELTPLGRH LCTLPVDPNI GKMLLIGAIF QCVNPALTIA AALAYRSPFV LPLNRKEEAD EAKRYFAGDS
0801: CSDHIALLKA YEGYRDAKRG GNEKDFCWQN FLSPVTLRMM EDMRNQFLDL LSDIGFVDKS KPNAYNQYSY DMEMISAVLC AGLYPNVVQC KRRGKRTAFY
0901: TKELGKVDIH PGSVNARVNL FSLPYLVYSE KVKTTSVYIR DSTNISDYAL LMFGGNLIPS KTGEGIEMLG GYLHFSASKN ILELIQRLRG EVDKLLNKKI
1001: EDPSLDITVE GKGVVSAVVE LLRSQKH
0101: NKIEQWKTGG EQEMLIKRNF SRGDQQTLSD MALQMGLYFH AYNKGKALVV SKVPLPDYRA DLDERHGSTQ KEIKMSTETE RKLGSLLKTT QESGSSGASA
0201: SAFNDQQDRT STLGLKRPDS ASKLPDSLEK EKFSFALKER QEKLKATESV KALKAFREKL PAFKMKEEFL NSVSQNQVLV VSGETGCGKT TQLPQFILEE
0301: EISSLRGADC NIICTQPRRI SAISVASRIS AERGESIGES VGYQIRLESK RSDQTRLLFC TTGVLLRRLI EDPNLTNVSH LLVDEIHERG MNEDFLLIIL
0401: RDLLPRRPDL RLILMSATIN ADMFSTYFGN SPTMHIPGFT FPVAELFLED VLEKSRYNIK SSDSGNYQGS SRGRRRESES KKDDLTTLFE DIDINSHYKS
0501: YSSATRNSLE AWSGAQIDVD LVEATIEHIC RLEGGGAILV FLTGWDEISK LLEKINMNNF LGDSSKFLVL PLHGSMPTVN QREIFDRPPP NKRKIVLATN
0601: IAESSITIDD VVYVVDCGKA KETSYDALNK VACLLPSWIS KASAHQRRGR AGRVQAGVCY RLYPKVIYDA FPQYQLPEII RTPLQELCLH IKSLQVGSIG
0701: SFLAKALQPP DALAVENAIE LLKTIGALND VEELTPLGRH LCTLPVDPNI GKMLLIGAIF QCVNPALTIA AALAYRSPFV LPLNRKEEAD EAKRYFAGDS
0801: CSDHIALLKA YEGYRDAKRG GNEKDFCWQN FLSPVTLRMM EDMRNQFLDL LSDIGFVDKS KPNAYNQYSY DMEMISAVLC AGLYPNVVQC KRRGKRTAFY
0901: TKELGKVDIH PGSVNARVNL FSLPYLVYSE KVKTTSVYIR DSTNISDYAL LMFGGNLIPS KTGEGIEMLG GYLHFSASKN ILELIQRLRG EVDKLLNKKI
1001: EDPSLDITVE GKGVVSAVVE LLRSQKH
Arabidopsis Description
RNA helicase family protein [Source:TAIR;Acc:AT2G35920]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.