Factsheet for Zm00001d032735_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 1
nucleus 3

Predictors

GFP

MS/MS

Papers

plastid: 22065420

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045376_P001	Maize	cytosol	31.14	97.58
Zm00001d019056_P001	Maize	nucleus	18.57	96.0
KXG38358	Sorghum	nucleus	95.07	94.88
HORVU1Hr1G039880.1	Barley	nucleus	80.46	88.04
Os10t0471350-01	Rice	nucleus	84.82	87.88
GSMUA_Achr8P12550_001	Banana	cytosol	38.1	86.59
TraesCS1D01G148100.2	Wheat	nucleus	85.2	85.62
TraesCS1A01G151100.1	Wheat	nucleus	85.2	85.62
TraesCS1B01G168700.3	Wheat	nucleus	84.91	85.16
PGSC0003DMT400055058	Potato	nucleus	63.25	76.58
KRH72171	Soybean	nucleus	64.8	74.44
VIT_08s0032g01230.t01	Wine grape	nucleus, plastid	72.73	73.37
Solyc01g006970.2.1	Tomato	nucleus	73.11	73.33
Bra023043.1-P	Field mustard	nucleus	69.73	72.46
KRH32860	Soybean	mitochondrion, nucleus, plastid	71.95	72.23
AT2G35920.3	Thale cress	plastid	70.21	70.69
CDX79642	Canola	nucleus, vacuole	70.7	70.63
CDX84588	Canola	plastid, vacuole	70.6	70.53
GSMUA_Achr8P12540_001	Banana	nucleus	34.33	64.31
Zm00001d034013_P002	Maize	golgi, mitochondrion, vacuole	43.62	37.61
Zm00001d028923_P002	Maize	nucleus	23.31	33.43
Zm00001d040082_P003	Maize	plastid	42.94	31.56
Zm00001d047601_P006	Maize	nucleus	23.4	31.31
Zm00001d049980_P001	Maize	plasma membrane	20.79	30.8
Zm00001d045147_P015	Maize	nucleus	20.89	30.59
Zm00001d011963_P002	Maize	plasma membrane	20.31	29.13
Zm00001d012661_P002	Maize	mitochondrion, plastid	33.17	26.38
Zm00001d003655_P006	Maize	nucleus, plastid	35.59	25.84
Zm00001d015893_P001	Maize	nucleus, plasma membrane	25.63	21.44
Zm00001d039380_P001	Maize	nucleus	18.67	20.38
Zm00001d031581_P002	Maize	nucleus	24.47	19.11
Zm00001d006459_P003	Maize	plastid	23.89	18.35
Zm00001d017967_P003	Maize	nucleus	20.21	16.34
Zm00001d022176_P002	Maize	nucleus	22.15	13.07

Protein Annotations

Gene3D:1.20.120.1080	EntrezGene:103643471	Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1D6KTP8	InterPro:DEAD/DEAH_box_helicase_dom
InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DUF1605	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	ProteinID:ONM05959.1	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFAM:PF04408	PFAM:PF07717	ScanProsite:PS00690	PFscan:PS51192	PFscan:PS51194
PANTHER:PTHR18934	PANTHER:PTHR18934:SF191	SMART:SM00487	SMART:SM00490	SMART:SM00847	SUPFAM:SSF52540
UniParc:UPI0004DEC37C	EnsemblPlantsGene:Zm00001d032735	EnsemblPlants:Zm00001d032735_P001	EnsemblPlants:Zm00001d032735_T001	SEG:seg	:

Description

DExH-box ATP-dependent RNA helicase DExH1

Coordinates

chr1:+:236791610..236815089

Molecular Weight (calculated)

115148.0 Da

IEP (calculated)

8.804

GRAVY (calculated)

-0.265

Length

1034 amino acids

Sequence
(BLAST)

0001: MLLHSSACHG SRLLSPCSSS CSRHYLLSSF ASTPLKTLNA LRTLVVMSYR GGRGGGGPNS HRGRGRGGGG GAGRRGGGGG RGEQRWWDPE WRAERLRQMH
0101: GEVEKVDENE WWNKIGQLRE GSQQELVVKR NFGRDGQNIL ANMAQRQGIY FNAYNKGKTL VFSKVPLPDY RADLDDRHGS TQKEIKMSNQ TEARVEDLLS
0201: RSKWNNNSAS TSTVSTRQIF PGASSSVVEP AAPIDKEKLS SQLRELQNSR KTTASARSMQ SFREKLPAFS MREGFLKAVA ANQVLVISGE TGCGKTTQLP
0301: QFILEEEINS LRGADCNIIC TQPRRISAIS VAARVSAERG EELGEAVGYQ IRLESKRSAQ TRLLFCTTGV LLRRLVQEPD LIGVSHLLVD EIHERGMNED
0401: FLIIILRDLL PRRPDLRLVL MSATINAELF SMYFGDAPVM HIPGFTFPVA ELFLEDVLEK TRYRINSERD NFAGSSRRKR FSSVKSDPLS DVFEDIDITK
0501: EYGNYSSSTR QSLEAWSAAE LDLSLVENTI EYICRYEAEG AILVFLTGWD EISKLLDKIK GNNFLGSPNR FLVLPLHGSM PTVNQREIFD RPPANMRKIV
0601: LATNIAESSI TIDDVVYVID CGKAKETSYD ALNKLACLLP SWISKASAHQ RRGRAGRVQP GFCYRLYPKI IHDAMPQFQL PEILRTPLQE LCLTIKSLQL
0701: GAVSSFLAKS LQPPDPLSVK NAIELLKTIG ALDDMEELTS LGRHLCTLPL DPNIGKMLLM GSVFQCLDPV LTIAAALAYR NPFVLPIDRK EEADAVKRSF
0801: AGDSCSDHIA LVKAFVAWKD AKRSGRERTF CWESFLSPMT LKMMDDMRNQ FFDLLSDIGF VSKTAGVKAY NRYGNDLEMV CAVLCAGLYP NVVQCKRRGK
0901: RTAFYTKDVG KVDIHPSSVN AFVNQFPLPF LVYSEKVKTA SIYVRDSTNI SDYALLLFGG SLSPSKTGEG IEMLGGYLHF SAPKRTIELI QKLRGELDKL
1001: LQKKIEEPGL DIFSQGKGVV AAAVELLHSQ NFDH

Best Arabidopsis Sequence Match ( AT2G35920.1 )
(BLAST)

001: MPPHGPNSQG GRRGGGHSSG RRGGRGGGGR GGGGGGRGEQ RWWDPVWRAE RLRQQQAEME VLDENEWWNK IEQWKTGGEQ EMLIKRNFSR GDQQTLSDMA
101: LQMGLYFHAY NKGKALVVSK VPLPDYRADL DERHGSTQKE IKMSTETERK LGSLLKTTQE SGSSGASASA FNDQQDRTST LGLKRPDSAS KLPDSLEKEK
201: FSFALKERQE KLKATESVKA LKAFREKLPA FKMKEEFLNS VSQNQVLVVS GETGCGKTTQ LPQFILEEEI SSLRGADCNI ICTQPRRISA ISVASRISAE
301: RGESIGESVG YQIRLESKRS DQTRLLFCTT GVLLRRLIED PNLTNVSHLL VDEIHERGMN EDFLLIILRD LLPRRPDLRL ILMSATINAD MFSTYFGNSP
401: TMHIPGFTFP VAELFLEDVL EKSRYNIKSS DSGNYQGSSR GRRRESESKK DDLTTLFEDI DINSHYKSYS SATRNSLEAW SGAQIDVDLV EATIEHICRL
501: EGGGAILVFL TGWDEISKLL EKINMNNFLG DSSKFLVLPL HGSMPTVNQR EIFDRPPPNK RKIVLATNIA ESSITIDDVV YVVDCGKAKE TSYDALNKVA
601: CLLPSWISKA SAHQRRGRAG RVQAGVCYRL YPKVIYDAFP QYQLPEIIRT PLQELCLHIK SLQVGSIGSF LAKALQPPDA LAVENAIELL KTIGALNDVE
701: ELTPLGRHLC TLPVDPNIGK MLLIGAIFQC VNPALTIAAA LAYRSPFVLP LNRKEEADEA KRYFAGDSCS DHIALLKAYE GYRDAKRGGN EKDFCWQNFL
801: SPVTLRMMED MRNQFLDLLS DIGFVDKSKP NAYNQYSYDM EMISAVLCAG LYPNVVQCKR RGKRTAFYTK ELGKVDIHPG SVNARVNLFS LPYLVYSEKV
901: KTTSVYIRDS TNISDYALLM FGGNLIPSKT GEGIEMLGGY LHFSASKNIL ELIQRLRGEV DKLLNKKIED PSLDITVEGK GVVSAVVELL RSQKH

Arabidopsis Description

RNA helicase family protein [Source:TAIR;Acc:AT2G35920]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.