Factsheet for AT2G35920.3

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023043.1-P	Field mustard	nucleus	88.41	91.26
CDX79642	Canola	nucleus, vacuole	90.46	89.76
CDX84588	Canola	plastid, vacuole	90.36	89.66
GSMUA_Achr8P12550_001	Banana	cytosol	35.05	79.12
Zm00001d045376_P001	Maize	cytosol	25.41	79.09
PGSC0003DMT400055058	Potato	nucleus	63.68	76.58
KRH72171	Soybean	nucleus	66.7	76.11
KRH32860	Soybean	mitochondrion, nucleus, plastid	75.56	75.34
VIT_08s0032g01230.t01	Wine grape	nucleus, plastid	74.68	74.83
Solyc01g006970.2.1	Tomato	nucleus	74.1	73.81
HORVU1Hr1G039880.1	Barley	nucleus	66.7	72.49
Os10t0471350-01	Rice	nucleus	69.33	71.34
Zm00001d019056_P001	Maize	nucleus	13.83	71.0
Zm00001d032735_P001	Maize	plastid	70.69	70.21
KXG38358	Sorghum	nucleus	70.3	69.69
TraesCS1D01G148100.2	Wheat	nucleus	69.33	69.19
TraesCS1A01G151100.1	Wheat	nucleus	69.33	69.19
TraesCS1B01G168700.3	Wheat	nucleus	69.33	69.06
GSMUA_Achr8P12540_001	Banana	nucleus	32.62	60.69
AT5G04895.1	Thale cress	mitochondrion	45.86	40.57
AT2G01130.1	Thale cress	nucleus	41.87	38.63
AT1G48650.2	Thale cress	nucleus, plastid	43.33	36.9
AT2G47250.1	Thale cress	nucleus	23.47	33.06
AT3G62310.1	Thale cress	nucleus	23.08	32.64
AT4G18465.1	Thale cress	nucleus	21.52	31.8
AT1G26370.1	Thale cress	plastid	20.93	29.99
AT4G16680.2	Thale cress	nucleus	23.17	29.9
AT1G27900.1	Thale cress	nucleus	19.96	29.29
AT1G58060.1	Thale cress	nucleus	37.29	26.25
AT2G30800.1	Thale cress	nucleus	32.33	25.56
AT1G58050.1	Thale cress	nucleus	35.15	25.48
AT1G32490.1	Thale cress	cytosol	24.34	23.95
AT5G14900.1	Thale cress	cytosol	6.91	23.59
AT2G35340.1	Thale cress	endoplasmic reticulum, nucleus	23.66	23.28
AT3G26560.1	Thale cress	nucleus	25.22	22.17
AT1G06670.1	Thale cress	nucleus	30.96	20.18
AT5G13010.1	Thale cress	nucleus	23.37	19.12
AT1G33390.2	Thale cress	nucleus	20.16	16.73
AT5G10370.1	Thale cress	nucleus	21.52	12.45
AT4G01020.1	Thale cress	nucleus	21.32	12.26

Protein Annotations

Gene3D:1.20.120.1080	Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:818165	UniProt:A0A1P8AXM2	ProteinID:AAD21465.1
ProteinID:AEC09177.1	EMBL:AK221966	ProteinID:ANM61419.1	ProteinID:ANM61420.1	ArrayExpress:AT2G35920	EnsemblPlantsGene:AT2G35920
RefSeq:AT2G35920	TAIR:AT2G35920	RefSeq:AT2G35920-TAIR-G	EnsemblPlants:AT2G35920.3	EMBL:AY070430	Unigene:At.27892
ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA/RNA_helicase_DEAH_CS	InterPro:DUF1605	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0006139	GO:GO:0006396	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787
InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	RefSeq:NP_001323636.1
RefSeq:NP_001323637.1	RefSeq:NP_850255.1	ProteinID:OAP08215.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
PFAM:PF04408	PFAM:PF07717	ScanProsite:PS00690	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934
PANTHER:PTHR18934:SF191	SMART:SM00487	SMART:SM00490	SMART:SM00847	SUPFAM:SSF52540	UniParc:UPI00084929F9
SEG:seg	:	:	:	:	:

Description

RNA helicase family protein [Source:TAIR;Acc:AT2G35920]

Coordinates

chr2:+:15075343..15080812

Molecular Weight (calculated)

114653.0 Da

IEP (calculated)

8.394

GRAVY (calculated)

-0.357

Length

1027 amino acids

Sequence
(BLAST)

0001: MQQSLSCFST LRFLLPFSSK LSPLRPLFHT AAMPPHGPNS QGGRRGGGHS SGRRGGRGGG GRGGGGGGRG EQRWWDPVWR AERLRQQQAE MEVLDENEWW
0101: NKIEQWKTGG EQEMLIKRNF SRGDQQTLSD MALQMGLYFH AYNKGKALVV SKVPLPDYRA DLDERHGSTQ KEIKMSTETE RKLGSLLKTT QESGSSGASA
0201: SAFNDQQDRT STLGLKRPDS ASKLPDSLEK EKFSFALKER QEKLKATESV KALKAFREKL PAFKMKEEFL NSVSQNQVLV VSGETGCGKT TQLPQFILEE
0301: EISSLRGADC NIICTQPRRI SAISVASRIS AERGESIGES VGYQIRLESK RSDQTRLLFC TTGVLLRRLI EDPNLTNVSH LLVDEIHERG MNEDFLLIIL
0401: RDLLPRRPDL RLILMSATIN ADMFSTYFGN SPTMHIPGFT FPVAELFLED VLEKSRYNIK SSDSGNYQGS SRGRRRESES KKDDLTTLFE DIDINSHYKS
0501: YSSATRNSLE AWSGAQIDVD LVEATIEHIC RLEGGGAILV FLTGWDEISK LLEKINMNNF LGDSSKFLVL PLHGSMPTVN QREIFDRPPP NKRKIVLATN
0601: IAESSITIDD VVYVVDCGKA KETSYDALNK VACLLPSWIS KASAHQRRGR AGRVQAGVCY RLYPKVIYDA FPQYQLPEII RTPLQELCLH IKSLQVGSIG
0701: SFLAKALQPP DALAVENAIE LLKTIGALND VEELTPLGRH LCTLPVDPNI GKMLLIGAIF QCVNPALTIA AALAYRSPFV LPLNRKEEAD EAKRYFAGDS
0801: CSDHIALLKA YEGYRDAKRG GNEKDFCWQN FLSPVTLRMM EDMRNQFLDL LSDIGFVDKS KPNAYNQYSY DMEMISAVLC AGLYPNVVQC KRRGKRTAFY
0901: TKELGKVDIH PGSVNARVNL FSLPYLVYSE KVKTTSVYIR DSTNISDYAL LMFGGNLIPS KTGEGIEMLG GYLHFSASKN ILELIQRLRG EVDKLLNKKI
1001: EDPSLDITVE GKGVVSAVVE LLRSQKH

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.