Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G171200.2 | Wheat | nucleus | 92.05 | 96.22 |
| TraesCS2B01G190100.1 | Wheat | nucleus | 91.01 | 95.79 |
| TraesCS2A01G164100.1 | Wheat | nucleus | 92.44 | 93.15 |
| HORVU5Hr1G019730.1 | Barley | nucleus, plastid | 76.6 | 81.85 |
| Os07t0621500-01 | Rice | cytosol, nucleus | 55.56 | 78.79 |
| OQU90279 | Sorghum | nucleus | 62.9 | 75.68 |
| Zm00001d022176_P002 | Maize | nucleus | 68.88 | 71.75 |
| GSMUA_Achr8P17640_001 | Banana | nucleus | 41.32 | 61.2 |
| PGSC0003DMT400041805 | Potato | nucleus | 44.77 | 50.37 |
| KRG97543 | Soybean | nucleus, plastid | 47.62 | 50.26 |
| KRH31333 | Soybean | nucleus, plastid | 47.01 | 49.42 |
| Solyc04g014210.2.1 | Tomato | nucleus | 46.47 | 49.02 |
| Solyc11g010310.1.1 | Tomato | nucleus | 45.64 | 48.86 |
| PGSC0003DMT400060759 | Potato | nucleus | 46.14 | 48.7 |
| AT5G10370.1 | Thale cress | nucleus | 44.27 | 45.52 |
| Bra006057.1-P | Field mustard | plastid | 43.67 | 45.41 |
| AT4G01020.1 | Thale cress | nucleus | 44.38 | 45.33 |
| CDX78376 | Canola | plastid | 43.51 | 45.19 |
| CDX81170 | Canola | plastid | 43.62 | 45.15 |
| VIT_07s0191g00210.t01 | Wine grape | nucleus | 42.96 | 45.14 |
| Bra009038.1-P | Field mustard | plastid | 42.74 | 44.14 |
| CDX69841 | Canola | plastid | 42.74 | 44.14 |
| CDX96996 | Canola | nucleus | 42.63 | 43.98 |
| HORVU4Hr1G052730.3 | Barley | cytosol | 12.27 | 31.07 |
| HORVU3Hr1G028550.17 | Barley | cytosol | 11.01 | 28.84 |
| HORVU7Hr1G032080.3 | Barley | plastid | 11.18 | 24.91 |
| HORVU1Hr1G039880.1 | Barley | nucleus | 11.95 | 23.07 |
| HORVU1Hr1G056370.1 | Barley | nucleus | 12.99 | 22.3 |
| HORVU1Hr1G056400.1 | Barley | nucleus | 12.99 | 22.25 |
| HORVU4Hr1G088270.17 | Barley | mitochondrion | 12.88 | 21.76 |
| HORVU5Hr1G094990.5 | Barley | endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, vacuole | 13.7 | 21.74 |
| HORVU0Hr1G007860.1 | Barley | nucleus | 13.48 | 19.81 |
| HORVU2Hr1G047870.2 | Barley | nucleus | 13.7 | 19.79 |
| HORVU3Hr1G002800.8 | Barley | mitochondrion | 13.21 | 19.33 |
| HORVU0Hr1G039590.6 | Barley | nucleus | 12.0 | 17.02 |
| HORVU3Hr1G074660.7 | Barley | plastid | 11.78 | 16.88 |
Protein Annotations
| Gene3D:1.10.10.2130 | Gene3D:1.20.120.1750 | MapMan:19.2.2.1.5.4.3 | Gene3D:3.30.40.10 | Gene3D:3.40.50.300 | UniProt:A0A287HJJ8 |
| ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DNA/RNA_helicase_DEAH_CS | InterPro:DUF1605 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 |
| GO:GO:0046872 | EnsemblPlantsGene:HORVU2Hr1G030040 | EnsemblPlants:HORVU2Hr1G030040.17 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IBR_dom | InterPro:IPR001650 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:IPR014001 | InterPro:P-loop_NTPase |
| PFAM:PF00270 | PFAM:PF00271 | PFAM:PF01485 | PFAM:PF04408 | PFAM:PF07717 | ScanProsite:PS00518 |
| ScanProsite:PS00690 | PFscan:PS50089 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF81 |
| InterPro:RBD_domain_sf | SMART:SM00487 | SMART:SM00490 | SMART:SM00647 | SMART:SM00847 | SUPFAM:SSF52540 |
| SUPFAM:SSF54928 | SUPFAM:SSF57850 | UniParc:UPI000B476AF7 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr2H:-:109867364..109877335
Molecular Weight (calculated)
205269.0 Da
IEP (calculated)
7.615
GRAVY (calculated)
-0.227
Length
1825 amino acids
Sequence
(BLAST)
(BLAST)
0001: SSRRRRCRCR HLAFLEASTH RRPRHQSSLD APPAPPCLSR RASVASMRQS NHCRPFRPPD WGSPPPHCRP HHQLNHRQPQ SAPRFAVILF RAGPNISTPT
0101: ATEIDALVAG LPSPRPDNLS VFSSGRDAAR LLFRSLPAAA AAARELWSLR LEGLHLLTPY LPNAALAAHA FPLIAPLFAS HASRLLDTDL VSRSAARSAE
0201: LVASIQSMEH RLRSRNSFRD FDQLHLQKKT LEAEKDSVDA KIAEYKASMI SIRRAMLRGT DDEEEGVYVF GIGEGEDVDF ARLHMMMLRE CRRLYEGLPI
0301: YAYRRKILNH IFNNQVMILI GETGSGKSTQ LVQFLADSGL AANGSIVCTQ PRKIAAASLA RRVDEESNGC YKDNFVLSYS TFLNSQDLSS KIIFCTDSCL
0401: LHHCMNDVGL DGISYIIVDE AHERSLNTDL LLALIKKKLL DRLDLHLIIM SATADADKLA DYFYGCQTFH VKGRNFPVEI NYVPDVSVEA SSNAVPNSMC
0501: DARATASYVN DVVRMVSIIH KNEEEGAVLA FLTSQLDVEW ACENFSDAGA VVLPMHGKLS HVEQSHVFKS YPGKRKIIFC TNMAETSLTI KEVKYVVDSG
0601: LAKESRFVPS SGLNVLKVNW ISQSSANQRA GRAGRTGAGK CYRLYSEADF SMMDLHQEPE IRKVHLGTAV LRILALGVKD ARKFEFVDAP NPEAISMAVK
0701: NLEQLGAVKH RLNCFELTDT GRYLVKLGIE PRLGKIMLNC FDVGLRKEGV VLAAVMANSS SIFCRVGTDE EKHKADLQKV RLCHRDGDLF TLLAVYKKWE
0801: DGHDNRNMWC WQNSVNAKTM RRCQETISEL ENCLKHELNI IIPSYWRWNP EAPTVHDKDL KRIILSSLTG NLAMFLGHER FGYQVISTGQ VVNLHPSSSL
0901: LNYGIKPEWV VFTEILSVPN QYLVCVTAVD HDALYTIHPV SFIQQLEEHK LQIKVISGLG TNLLRRFCGK YGQNQQKIIS RLKEDCRDDR ITVEINFQNN
1001: EVVLFATEQN MEKVFCTVNS ALECEGKILR NECLERNLFP GRPGSSPIAL FGSGAEVKHL ELGRRYLTVE VLHQNAHDID DKELIFLVDS IVSGVANFHK
1101: STGSFWIASD GTKWGKFTFL KPENAEDAVS KLNGIEFNGS SLKVVPVWTF DNRGLPFPAV RAKLCWPRRH SSGRALVTCA SGEAEFLVND CFALGIGGRY
1201: IKCRVSTKYE NCVFVEGIPV HVTEPELYDA FRSTTTRRIL NIRLLRVKGN AIASPSVSTC EEELVREISP FMPNKSFPGQ NFRVEVFPPE ENDSLTRATI
1301: TFDGSLHREA ARALDHLEGH FLPCCQPWQI IQCNHVFHST LSCPVRVYNV ISQEVASLLE SFQSQKGVSY NFEKTENGIF RLKLTANATK TIADLRRPLE
1401: ILMKGKTINH PDLTLSAVQL LLSRDGVAHL KSIEQETGAY IMYDRQSLNI KVFGHQDQMA AAEVKLVHAL RQLLEKKPLE ISLRGHNLPP DLMKKTVENF
1501: GVDLEGFNKE MPEIKVELHK HRHLLKVWGS KEDKRRVERM ISELASFKHS SLVQLASENV GGKEDNQRVD YNELSEDACP ICLCEIENPF RLESCGHMFC
1601: LACLVDQCES AMKSNDGFPV CCLKAGCKEH LLVVDLKHLL SNEKLEDLFR ASLRAFVASR AGMYRFCPTP DCQSIYQVSV PDAENKPFSC GACYVEICTK
1701: CHFEYHPFIS CEAYKEYKED PDSTLLEWRK GKANVKSCPS CGYTIEKADG CNHVECRCGS HICWACLENF RSSEECYGHL RLILWITDVN GVDRIIGPEN
1801: STVARLEMFF LMVYSKEVNP VSRFP
0101: ATEIDALVAG LPSPRPDNLS VFSSGRDAAR LLFRSLPAAA AAARELWSLR LEGLHLLTPY LPNAALAAHA FPLIAPLFAS HASRLLDTDL VSRSAARSAE
0201: LVASIQSMEH RLRSRNSFRD FDQLHLQKKT LEAEKDSVDA KIAEYKASMI SIRRAMLRGT DDEEEGVYVF GIGEGEDVDF ARLHMMMLRE CRRLYEGLPI
0301: YAYRRKILNH IFNNQVMILI GETGSGKSTQ LVQFLADSGL AANGSIVCTQ PRKIAAASLA RRVDEESNGC YKDNFVLSYS TFLNSQDLSS KIIFCTDSCL
0401: LHHCMNDVGL DGISYIIVDE AHERSLNTDL LLALIKKKLL DRLDLHLIIM SATADADKLA DYFYGCQTFH VKGRNFPVEI NYVPDVSVEA SSNAVPNSMC
0501: DARATASYVN DVVRMVSIIH KNEEEGAVLA FLTSQLDVEW ACENFSDAGA VVLPMHGKLS HVEQSHVFKS YPGKRKIIFC TNMAETSLTI KEVKYVVDSG
0601: LAKESRFVPS SGLNVLKVNW ISQSSANQRA GRAGRTGAGK CYRLYSEADF SMMDLHQEPE IRKVHLGTAV LRILALGVKD ARKFEFVDAP NPEAISMAVK
0701: NLEQLGAVKH RLNCFELTDT GRYLVKLGIE PRLGKIMLNC FDVGLRKEGV VLAAVMANSS SIFCRVGTDE EKHKADLQKV RLCHRDGDLF TLLAVYKKWE
0801: DGHDNRNMWC WQNSVNAKTM RRCQETISEL ENCLKHELNI IIPSYWRWNP EAPTVHDKDL KRIILSSLTG NLAMFLGHER FGYQVISTGQ VVNLHPSSSL
0901: LNYGIKPEWV VFTEILSVPN QYLVCVTAVD HDALYTIHPV SFIQQLEEHK LQIKVISGLG TNLLRRFCGK YGQNQQKIIS RLKEDCRDDR ITVEINFQNN
1001: EVVLFATEQN MEKVFCTVNS ALECEGKILR NECLERNLFP GRPGSSPIAL FGSGAEVKHL ELGRRYLTVE VLHQNAHDID DKELIFLVDS IVSGVANFHK
1101: STGSFWIASD GTKWGKFTFL KPENAEDAVS KLNGIEFNGS SLKVVPVWTF DNRGLPFPAV RAKLCWPRRH SSGRALVTCA SGEAEFLVND CFALGIGGRY
1201: IKCRVSTKYE NCVFVEGIPV HVTEPELYDA FRSTTTRRIL NIRLLRVKGN AIASPSVSTC EEELVREISP FMPNKSFPGQ NFRVEVFPPE ENDSLTRATI
1301: TFDGSLHREA ARALDHLEGH FLPCCQPWQI IQCNHVFHST LSCPVRVYNV ISQEVASLLE SFQSQKGVSY NFEKTENGIF RLKLTANATK TIADLRRPLE
1401: ILMKGKTINH PDLTLSAVQL LLSRDGVAHL KSIEQETGAY IMYDRQSLNI KVFGHQDQMA AAEVKLVHAL RQLLEKKPLE ISLRGHNLPP DLMKKTVENF
1501: GVDLEGFNKE MPEIKVELHK HRHLLKVWGS KEDKRRVERM ISELASFKHS SLVQLASENV GGKEDNQRVD YNELSEDACP ICLCEIENPF RLESCGHMFC
1601: LACLVDQCES AMKSNDGFPV CCLKAGCKEH LLVVDLKHLL SNEKLEDLFR ASLRAFVASR AGMYRFCPTP DCQSIYQVSV PDAENKPFSC GACYVEICTK
1701: CHFEYHPFIS CEAYKEYKED PDSTLLEWRK GKANVKSCPS CGYTIEKADG CNHVECRCGS HICWACLENF RSSEECYGHL RLILWITDVN GVDRIIGPEN
1801: STVARLEMFF LMVYSKEVNP VSRFP
001: MQVVIVREDK RNVRRKVSED EDDGTESEEE RLRDQREREE LEQHLRERDT ARTRKLTEPK MSKKEQEEFV RRDSAVDKGD IESLRKFSWQ EYMKKRKQKK
101: VLELKDDIED EPYLFGDEKL TEREIREFRY KREIYELIKK STQEEDNVGE YRMPDAYDQQ GSVDQEKRFA VSVQRYRDMG SAEKMNPFAE QEAWEDHQIE
201: NAALKFGAKN KEVSDNYEFV FEDQIDFIKA SVLAGDNYED EMHAKPSQDS AGKSAFHMLQ EDRKALPIYT YRDQLLNAVK DHQVLIIVGE TGSGKTTQIP
301: QYLHEAGYTK LGKVGCTQPR RVAAMSVAAR VAQEMGGKLG HEVGYSIRFE DCTSEKTILK YMTDGMLLRE LLGEPDLGSY SVIIVDEAHE RTLRTDILFG
401: LVKDIARARP DLKLLISSAT MDAEKFSDFF DQAPIFRFPG RRYPVDICFT TAPEADYMDA AITTVLTIHV KEPLGDVLVF LPGQEEIEAV EENLKHKIRG
501: LGTKIRELII CPIYANLPSE LQAKIFEPTP EGARKVVLAT NIAETSLTID GIKYVVDPGF SKMKSYNPRT GMESLLVTPI SKASATQRTG RAGRTSPGKC
601: YRLYTAFNYY NDLEDNTVPE IQRTNLASVV LSLKSLGIHN LLNFDFMDPP PSEALIKSLE LLFALGALNQ LGELTKAGRR MAEFPLDPML SKMIVVSDKY
701: KCSDEIISIA AMLSIGPSIF YRPKDKQVHA DNAMKNFHVG NVGDHIAFLK IYNSWKETNY STQWCYENYI QVRSMKRARD IRDQLEGLLE RVEIDVSSNA
801: NELDSIRKSI VAGFFPHTAK LQKNGSYRTV KHPQTVHIHP ASGLSQVLPR WVVYHQLVLT SKEYMRQVTE LKPEWLIEIA PHYYQLKDVE DATSKKMPKT
901: SGRAVV
101: VLELKDDIED EPYLFGDEKL TEREIREFRY KREIYELIKK STQEEDNVGE YRMPDAYDQQ GSVDQEKRFA VSVQRYRDMG SAEKMNPFAE QEAWEDHQIE
201: NAALKFGAKN KEVSDNYEFV FEDQIDFIKA SVLAGDNYED EMHAKPSQDS AGKSAFHMLQ EDRKALPIYT YRDQLLNAVK DHQVLIIVGE TGSGKTTQIP
301: QYLHEAGYTK LGKVGCTQPR RVAAMSVAAR VAQEMGGKLG HEVGYSIRFE DCTSEKTILK YMTDGMLLRE LLGEPDLGSY SVIIVDEAHE RTLRTDILFG
401: LVKDIARARP DLKLLISSAT MDAEKFSDFF DQAPIFRFPG RRYPVDICFT TAPEADYMDA AITTVLTIHV KEPLGDVLVF LPGQEEIEAV EENLKHKIRG
501: LGTKIRELII CPIYANLPSE LQAKIFEPTP EGARKVVLAT NIAETSLTID GIKYVVDPGF SKMKSYNPRT GMESLLVTPI SKASATQRTG RAGRTSPGKC
601: YRLYTAFNYY NDLEDNTVPE IQRTNLASVV LSLKSLGIHN LLNFDFMDPP PSEALIKSLE LLFALGALNQ LGELTKAGRR MAEFPLDPML SKMIVVSDKY
701: KCSDEIISIA AMLSIGPSIF YRPKDKQVHA DNAMKNFHVG NVGDHIAFLK IYNSWKETNY STQWCYENYI QVRSMKRARD IRDQLEGLLE RVEIDVSSNA
801: NELDSIRKSI VAGFFPHTAK LQKNGSYRTV KHPQTVHIHP ASGLSQVLPR WVVYHQLVLT SKEYMRQVTE LKPEWLIEIA PHYYQLKDVE DATSKKMPKT
901: SGRAVV
Arabidopsis Description
MEE29Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH6 [Source:UniProtKB/Swiss-Prot;Acc:F4IJV4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.