Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400041647 | Potato | cytosol | 22.63 | 100.0 |
| Solyc11g010310.1.1 | Tomato | nucleus | 95.13 | 90.5 |
| PGSC0003DMT400060759 | Potato | nucleus | 73.24 | 68.71 |
| GSMUA_Achr8P17640_001 | Banana | nucleus | 45.01 | 59.25 |
| KRG97543 | Soybean | nucleus, plastid | 59.19 | 55.52 |
| KRH31333 | Soybean | nucleus, plastid | 58.38 | 54.55 |
| VIT_07s0191g00210.t01 | Wine grape | nucleus | 57.03 | 53.25 |
| Os07t0621500-01 | Rice | cytosol, nucleus | 41.62 | 52.45 |
| TraesCS5B01G080500.1 | Wheat | nucleus | 42.36 | 51.93 |
| OQU90279 | Sorghum | nucleus | 48.52 | 51.88 |
| CDX78376 | Canola | plastid | 54.87 | 50.65 |
| Bra006057.1-P | Field mustard | plastid | 54.75 | 50.6 |
| CDX81170 | Canola | plastid | 54.69 | 50.31 |
| AT5G10370.1 | Thale cress | nucleus | 54.5 | 49.8 |
| AT4G01020.1 | Thale cress | nucleus | 54.75 | 49.69 |
| CDX69841 | Canola | plastid | 53.02 | 48.67 |
| Bra009038.1-P | Field mustard | plastid | 52.96 | 48.61 |
| CDX96996 | Canola | nucleus | 52.77 | 48.39 |
| TraesCS2D01G171200.2 | Wheat | nucleus | 51.17 | 47.54 |
| TraesCS5D01G087800.2 | Wheat | nucleus | 49.08 | 47.52 |
| TraesCS2B01G190100.1 | Wheat | nucleus | 50.68 | 47.4 |
| TraesCS5A01G074100.1 | Wheat | nucleus | 48.95 | 47.26 |
| Zm00001d022176_P002 | Maize | nucleus | 50.99 | 47.2 |
| TraesCS3B01G129700.1 | Wheat | nucleus | 46.55 | 46.43 |
| TraesCS3D01G112900.1 | Wheat | nucleus | 38.22 | 46.37 |
| TraesCS3A01G111000.1 | Wheat | nucleus | 50.12 | 46.35 |
| HORVU5Hr1G019730.1 | Barley | nucleus, plastid | 48.64 | 46.19 |
| TraesCS2A01G164100.1 | Wheat | nucleus | 50.74 | 45.44 |
| HORVU2Hr1G030040.17 | Barley | nucleus | 50.37 | 44.77 |
| PGSC0003DMT400038620 | Potato | cytosol, nucleus, plastid | 8.51 | 39.54 |
| PGSC0003DMT400046188 | Potato | nucleus | 13.93 | 32.75 |
| PGSC0003DMT400009842 | Potato | mitochondrion | 7.52 | 32.36 |
| PGSC0003DMT400023284 | Potato | nucleus | 13.56 | 30.43 |
| PGSC0003DMT400084916 | Potato | nucleus | 14.73 | 29.84 |
| PGSC0003DMT400005723 | Potato | nucleus | 13.75 | 27.13 |
| PGSC0003DMT400039875 | Potato | nucleus | 14.8 | 26.0 |
| PGSC0003DMT400055058 | Potato | nucleus | 12.39 | 23.54 |
| PGSC0003DMT400063370 | Potato | nucleus | 14.8 | 22.86 |
| PGSC0003DMT400056692 | Potato | nucleus | 14.67 | 20.86 |
| PGSC0003DMT400055091 | Potato | mitochondrion | 14.3 | 19.93 |
| PGSC0003DMT400018531 | Potato | nucleus | 15.1 | 19.07 |
| PGSC0003DMT400000297 | Potato | nucleus | 13.93 | 16.92 |
| PGSC0003DMT400063366 | Potato | plastid | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.10.2130 | Gene3D:1.20.120.1750 | MapMan:19.2.2.1.5.4.3 | Gene3D:3.30.40.10 | Gene3D:3.40.50.300 | InterPro:DEAD/DEAH_box_helicase_dom |
| InterPro:DNA/RNA_helicase_DEAH_CS | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 |
| GO:GO:0004386 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0016787 | GO:GO:0019538 |
| GO:GO:0046872 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IBR_dom | InterPro:IPR001650 |
| InterPro:IPR001841 | InterPro:IPR013083 | InterPro:IPR013087 | InterPro:IPR014001 | InterPro:IPR036612 | InterPro:KH_dom_type_1_sf |
| UniProt:M1BC13 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF01485 | PFAM:PF04408 |
| EnsemblPlantsGene:PGSC0003DMG400016218 | PGSC:PGSC0003DMG400016218 | EnsemblPlants:PGSC0003DMT400041805 | ScanProsite:PS00028 | ScanProsite:PS00518 | ScanProsite:PS00690 |
| PFscan:PS50089 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF81 | SMART:SM00487 |
| SMART:SM00490 | SMART:SM00647 | SMART:SM00847 | SUPFAM:SSF52540 | SUPFAM:SSF54791 | SUPFAM:SSF57850 |
| UniParc:UPI0002951F33 | InterPro:Znf_C2H2_type | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | SEG:seg |
Description
ATP-dependent RNA helicase [Source:PGSC_GENE;Acc:PGSC0003DMG400016218]
Coordinates
chr11:-:2566545..2575125
Molecular Weight (calculated)
182202.0 Da
IEP (calculated)
7.018
GRAVY (calculated)
-0.142
Length
1622 amino acids
Sequence
(BLAST)
(BLAST)
0001: MVKLWELRLS GGHCCNPILK AKVELPSDRE ELNERLKGVF LEKLNRLING VLVQTWQKKL GFVIDEIEKI SMLLKKPNRV GVYQELWKKK KGIEGERDLI
0101: SLRIDEFKNG IKCIIDYLED SKNYEDFKVF DFGEVIDWNR IHFIMMRECR RLDDGLPIYG FRQQILQQIL SQQVTVLVGE TGSGKSTQLV QFLADSGITG
0201: TGSIVCTQPR KLAANSLASR VREESQECYD DCSISCNPPH SSCQQFDSKV IFMTDHCLLQ HYMGDKTLSN ISCIIVDEAH ERSLNTDLLL ALIKKLLHQR
0301: FDLRLIIMSA TVDANQLAGY FFGCGTFHVA GRTFPVDIKY VPCEDDAHHA VGAIASYVHD VIKMVTEIDR TEGAGAILAF LTSQSEVEWA CEQFKAPLAI
0401: ALPLHGKLSY DDQNRVFLSY PGKRKVIFTT NLAETSLTIP GVKYVVDSGM VKESRFEPGS GMNVLRICSV SQSSANQRAG RAGRTEPGKC FRLYSQSDFE
0501: DMPRHQEPEI RKVHLGVAVL RILALGIKNV QDFDFVDAPK PKAIEMATRN LVQLGAVTQR DDASYELTAE GLKLVKLGIE PRLGKMILSC FDQRLGKEGV
0601: ALAAVMANSS SIFCRVGSEG DKLKSDCRKV QFCHPSGDLF TLLSVYREWE IVPREKKNSW CWDNSINAKS MRRCHETVLE MEACLQNELN MILASYWRWH
0701: PQVHNKCDEV LQSIILSSLA ENVAVYSGYD QLGYEVALSG KCVQLHPSCS LLNFGQRPRW VVFGDVLASA NEYLVCVTAF EFSSLVSLTP APLFDFLKMD
0801: ALKLEKKVLT GFGVVLLKRF CGKSNSSINN LVSRIRTSYK DERIGIQVNV DENEVLLYAS SRDMESVTFQ VNDALEYESK LLRNECLEKC LFNGGSAASA
0901: SVALFGAGAV IKHLELEKRC LTVDIFPSNG NAIDDKELLM CLERATSGNI CMVHKYSGMG QDKEENKWGT VKFLTPDAAE QATFLNKVEF NGGFLKMVPS
1001: RSIHSSDQKM FRSVLKAKVS WPRRYSKGVG FLRCDPMDVP LILDDISDLM IGGNVIRCEA SDKNPDNIVI ARLDRDIAET EILEVLRATT NRRILDFFLV
1101: RGDSVENPPI ATCEEALRKE ISPFMPKKVP FVNSVRVQVF QPKLTEYFAK AAIIFDGSLH LEAAKALEQI DGMVLPGCLP WQKIRCERLF HSSVSCPAAV
1201: YHVIRNQLDS LLASLRRRKV GKCELQRNDN GSCTVRISAT ATKVVADLRR PLEQLMKGKI VDHVDITPKV VQLLFSREGS NIMRTIQRET GTYIYFDKHS
1301: LLVSIFGSLD NVDRAQQRFI GSLLALHENK QLEVHLRGGL LPHDLMKRVV QTFGPDLSAL KEKVPGAEFS LNTKRHCIYI NGTKDMKQSV EDIISEIAQR
1401: SFPIQTTGDD ADCPVCLCEL EDPYKLEACC HVFCRTCLLE QCESAIKSRE GFPMCCLHQG CAEPILLADL KSLLSIEKLE ELFRASLGAF VAANGSTYRF
1501: CPSPDCPSVY RIADPDMVGA PFACGACYVE TCTSCHLEYH PYLSCETYQK VKDDPDCSLE EWSKGKDNVK KCPVCRFTIE KVDGCNHIEC KCGKHVCWVC
1601: LLFFDTSDNC YDHLRSVHRS IT
0101: SLRIDEFKNG IKCIIDYLED SKNYEDFKVF DFGEVIDWNR IHFIMMRECR RLDDGLPIYG FRQQILQQIL SQQVTVLVGE TGSGKSTQLV QFLADSGITG
0201: TGSIVCTQPR KLAANSLASR VREESQECYD DCSISCNPPH SSCQQFDSKV IFMTDHCLLQ HYMGDKTLSN ISCIIVDEAH ERSLNTDLLL ALIKKLLHQR
0301: FDLRLIIMSA TVDANQLAGY FFGCGTFHVA GRTFPVDIKY VPCEDDAHHA VGAIASYVHD VIKMVTEIDR TEGAGAILAF LTSQSEVEWA CEQFKAPLAI
0401: ALPLHGKLSY DDQNRVFLSY PGKRKVIFTT NLAETSLTIP GVKYVVDSGM VKESRFEPGS GMNVLRICSV SQSSANQRAG RAGRTEPGKC FRLYSQSDFE
0501: DMPRHQEPEI RKVHLGVAVL RILALGIKNV QDFDFVDAPK PKAIEMATRN LVQLGAVTQR DDASYELTAE GLKLVKLGIE PRLGKMILSC FDQRLGKEGV
0601: ALAAVMANSS SIFCRVGSEG DKLKSDCRKV QFCHPSGDLF TLLSVYREWE IVPREKKNSW CWDNSINAKS MRRCHETVLE MEACLQNELN MILASYWRWH
0701: PQVHNKCDEV LQSIILSSLA ENVAVYSGYD QLGYEVALSG KCVQLHPSCS LLNFGQRPRW VVFGDVLASA NEYLVCVTAF EFSSLVSLTP APLFDFLKMD
0801: ALKLEKKVLT GFGVVLLKRF CGKSNSSINN LVSRIRTSYK DERIGIQVNV DENEVLLYAS SRDMESVTFQ VNDALEYESK LLRNECLEKC LFNGGSAASA
0901: SVALFGAGAV IKHLELEKRC LTVDIFPSNG NAIDDKELLM CLERATSGNI CMVHKYSGMG QDKEENKWGT VKFLTPDAAE QATFLNKVEF NGGFLKMVPS
1001: RSIHSSDQKM FRSVLKAKVS WPRRYSKGVG FLRCDPMDVP LILDDISDLM IGGNVIRCEA SDKNPDNIVI ARLDRDIAET EILEVLRATT NRRILDFFLV
1101: RGDSVENPPI ATCEEALRKE ISPFMPKKVP FVNSVRVQVF QPKLTEYFAK AAIIFDGSLH LEAAKALEQI DGMVLPGCLP WQKIRCERLF HSSVSCPAAV
1201: YHVIRNQLDS LLASLRRRKV GKCELQRNDN GSCTVRISAT ATKVVADLRR PLEQLMKGKI VDHVDITPKV VQLLFSREGS NIMRTIQRET GTYIYFDKHS
1301: LLVSIFGSLD NVDRAQQRFI GSLLALHENK QLEVHLRGGL LPHDLMKRVV QTFGPDLSAL KEKVPGAEFS LNTKRHCIYI NGTKDMKQSV EDIISEIAQR
1401: SFPIQTTGDD ADCPVCLCEL EDPYKLEACC HVFCRTCLLE QCESAIKSRE GFPMCCLHQG CAEPILLADL KSLLSIEKLE ELFRASLGAF VAANGSTYRF
1501: CPSPDCPSVY RIADPDMVGA PFACGACYVE TCTSCHLEYH PYLSCETYQK VKDDPDCSLE EWSKGKDNVK KCPVCRFTIE KVDGCNHIEC KCGKHVCWVC
1601: LLFFDTSDNC YDHLRSVHRS IT
0001: MRNSFPPSDG GRSTTDRRQQ SFPSSSTNRY NSRSAQSSPP LNHCTTWNQQ HSQYHNTNFP PNYRRDRAPS SGFSPPVTRA RPNFIVQLLH PAAANSDTKL
0101: SKKQEIESIA LLCEIPEESV HVPQFGCIAA SFSFRQWVDA RSAVVALWDY RLQGRHDFVP ELIPNVVVPS DMDELKDRLR DLFSSHVLSL MENGQGVKKV
0201: RMEIDDKSRQ VASFSSKRGL KFEVFEKKKA LEAERDLVVN RLDEFNNAMK SILRYLIGQD GYEFDVDDED DEDVAVFSLE GAYDWRRIHY LILRECRRLE
0301: DGLPIYAYRR QILKKIHCEQ IMVLIGETGS GKSTQLVQFL ADSGVAASES IVCTQPRKIA AMTLTDRVRE ESSGCYEENT VSCTPTFSST EEISSKVVYM
0401: TDNCLLQHYM KDRSLSGISC VIIDEAHERS LNTDLLLALL RKLLSRRIDL RLVIMSATAD ANQLSQYLFD CGILHVNGRN FPVEIVYSPS GTEENSVVGR
0501: IASYAGDVVK MAVEIHKTEK EGTILAFLTS QAEVEWACER FVAPSAIALP LHGKLSFEEQ FMVFQNYPGR RKVIFATNIA ETSLTIPGVK YVIDSGMVKE
0601: SKYEPRTGMS ILKVCQVSQS SARQRAGRAG RTEPGRCYRL YSKTDFDSMN LNQEPEIRRV HLGVALLRML ALGIDNIAAF EFVDAPVPEA IAMAIQNLVQ
0701: LGAVVEKNGV LELTQEGHCL VKLGLEPKLG KLILGCFRHR MGKEGIVLAA VMANASSIFC RVGNFDDKMK ADRLKVQFCN DNGDLFTLLS VYKEWASLPR
0801: DRRNKWCWEN SLNAKSMRRC EDTVKELEIC IERELTLVSP SYWVWNPNEG TKHDKYLKMV ILASLAENVA MYTGYDQLGY EVALTSQQVQ LHPSCSLLAF
0901: GQKPSWVVFG ELLSIVDQYL VCVTAFDFEA LYMLDPPPPF DASQMDERRL RVKKVVGCSS TVLKRFCGKS NRSLLSIVSR ARSLCSDERI GIQVDVDQNE
1001: IRLYASPLDM EKVSALVNDA LECEKKWMRN ECLEKYLFHG RGQIPIALFG SGAQIKHLEV DQRFLTVDVH YYGDDVVDDR ELLTFLEKKI DGCICSIYKF
1101: AANKQDCDEK EKWGRITFLT PESAMKATEI QKFDFKGSVL KVFPSLSTGG GIFKMPYFSS VTAKIRWPRK ESSGRGCLKC PSGDIHSILG DITSLEIGTN
1201: YVHIQRDQLS NDSILISGLG DLSEAEVLDV LEFRTQRRDL NFFIFRKKYS VQCPSPTACE EELHKRIFAR MSAKNPEPNC VQVQVFEPKE DNYFMRALIK
1301: FDGRLHLEAA KALQELNGEV LPGCLPWQKI KCEQLFQSSI ICSASIYNTV KRQLNVLLAR FERQKGGECC LEPTHNGAYR VKITAYATRP VAEMRRELEE
1401: LLRGKPINHP GFTPRVVQHL MSRDGINLMR KIQQETETYI LLDRHNLTVR ICGTSEKIAK AEQELVQSLM DYHESKQLEI HLRGPEIRPD LMKEVVKRFG
1501: PELQGIKEKV HGVDLKLNTR YHVIQVHGSK EMRQEVQKMV NELAREKSAL GEKPDEIELE CPICLSEVDD GYSLEGCSHL FCKACLLEQF EASMRNFDAF
1601: PILCSHIDCG APIVVADMRA LLSQEKLDEL ISASLSAFVT SSDGKLRFCS TPDCPSIYRV AGPQESGEPF ICGACHSETC TRCHLEYHPL ITCERYKKFK
1701: ENPDLSLKDW AKGKDVKECP ICKSTIEKTD GCNHLQCRCG KHICWTCLDV FTQAEPCYAH LRTIHGGIGL VELGVPEHPV AQPVHRL
0101: SKKQEIESIA LLCEIPEESV HVPQFGCIAA SFSFRQWVDA RSAVVALWDY RLQGRHDFVP ELIPNVVVPS DMDELKDRLR DLFSSHVLSL MENGQGVKKV
0201: RMEIDDKSRQ VASFSSKRGL KFEVFEKKKA LEAERDLVVN RLDEFNNAMK SILRYLIGQD GYEFDVDDED DEDVAVFSLE GAYDWRRIHY LILRECRRLE
0301: DGLPIYAYRR QILKKIHCEQ IMVLIGETGS GKSTQLVQFL ADSGVAASES IVCTQPRKIA AMTLTDRVRE ESSGCYEENT VSCTPTFSST EEISSKVVYM
0401: TDNCLLQHYM KDRSLSGISC VIIDEAHERS LNTDLLLALL RKLLSRRIDL RLVIMSATAD ANQLSQYLFD CGILHVNGRN FPVEIVYSPS GTEENSVVGR
0501: IASYAGDVVK MAVEIHKTEK EGTILAFLTS QAEVEWACER FVAPSAIALP LHGKLSFEEQ FMVFQNYPGR RKVIFATNIA ETSLTIPGVK YVIDSGMVKE
0601: SKYEPRTGMS ILKVCQVSQS SARQRAGRAG RTEPGRCYRL YSKTDFDSMN LNQEPEIRRV HLGVALLRML ALGIDNIAAF EFVDAPVPEA IAMAIQNLVQ
0701: LGAVVEKNGV LELTQEGHCL VKLGLEPKLG KLILGCFRHR MGKEGIVLAA VMANASSIFC RVGNFDDKMK ADRLKVQFCN DNGDLFTLLS VYKEWASLPR
0801: DRRNKWCWEN SLNAKSMRRC EDTVKELEIC IERELTLVSP SYWVWNPNEG TKHDKYLKMV ILASLAENVA MYTGYDQLGY EVALTSQQVQ LHPSCSLLAF
0901: GQKPSWVVFG ELLSIVDQYL VCVTAFDFEA LYMLDPPPPF DASQMDERRL RVKKVVGCSS TVLKRFCGKS NRSLLSIVSR ARSLCSDERI GIQVDVDQNE
1001: IRLYASPLDM EKVSALVNDA LECEKKWMRN ECLEKYLFHG RGQIPIALFG SGAQIKHLEV DQRFLTVDVH YYGDDVVDDR ELLTFLEKKI DGCICSIYKF
1101: AANKQDCDEK EKWGRITFLT PESAMKATEI QKFDFKGSVL KVFPSLSTGG GIFKMPYFSS VTAKIRWPRK ESSGRGCLKC PSGDIHSILG DITSLEIGTN
1201: YVHIQRDQLS NDSILISGLG DLSEAEVLDV LEFRTQRRDL NFFIFRKKYS VQCPSPTACE EELHKRIFAR MSAKNPEPNC VQVQVFEPKE DNYFMRALIK
1301: FDGRLHLEAA KALQELNGEV LPGCLPWQKI KCEQLFQSSI ICSASIYNTV KRQLNVLLAR FERQKGGECC LEPTHNGAYR VKITAYATRP VAEMRRELEE
1401: LLRGKPINHP GFTPRVVQHL MSRDGINLMR KIQQETETYI LLDRHNLTVR ICGTSEKIAK AEQELVQSLM DYHESKQLEI HLRGPEIRPD LMKEVVKRFG
1501: PELQGIKEKV HGVDLKLNTR YHVIQVHGSK EMRQEVQKMV NELAREKSAL GEKPDEIELE CPICLSEVDD GYSLEGCSHL FCKACLLEQF EASMRNFDAF
1601: PILCSHIDCG APIVVADMRA LLSQEKLDEL ISASLSAFVT SSDGKLRFCS TPDCPSIYRV AGPQESGEPF ICGACHSETC TRCHLEYHPL ITCERYKKFK
1701: ENPDLSLKDW AKGKDVKECP ICKSTIEKTD GCNHLQCRCG KHICWTCLDV FTQAEPCYAH LRTIHGGIGL VELGVPEHPV AQPVHRL
Arabidopsis Description
ATP-dependent RNA helicase DEAH11, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P0CE10]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.