Factsheet for TraesCS5B01G080500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G087800.2	Wheat	nucleus	96.9	76.54
TraesCS5A01G074100.1	Wheat	nucleus	96.75	76.19
Os07t0621500-01	Rice	cytosol, nucleus	73.32	75.37
HORVU5Hr1G019730.1	Barley	nucleus, plastid	93.2	72.19
TraesCS2B01G190100.1	Wheat	nucleus	84.5	64.48
OQU90279	Sorghum	nucleus	73.32	63.94
TraesCS3B01G129700.1	Wheat	nucleus	76.95	62.61
GSMUA_Achr8P17640_001	Banana	nucleus	51.17	54.95
Zm00001d022176_P002	Maize	nucleus	72.26	54.57
PGSC0003DMT400041805	Potato	nucleus	51.93	42.36
KRG97543	Soybean	nucleus, plastid	53.97	41.3
KRH31333	Soybean	nucleus, plastid	53.82	41.01
Solyc04g014210.2.1	Tomato	nucleus	52.91	40.46
Solyc11g010310.1.1	Tomato	nucleus	51.78	40.18
PGSC0003DMT400060759	Potato	nucleus	52.46	40.14
VIT_07s0191g00210.t01	Wine grape	nucleus	51.55	39.26
Bra006057.1-P	Field mustard	plastid	48.68	36.7
AT5G10370.1	Thale cress	nucleus	49.21	36.68
CDX81170	Canola	plastid	48.83	36.64
CDX78376	Canola	plastid	48.53	36.54
AT4G01020.1	Thale cress	nucleus	49.21	36.43
CDX96996	Canola	nucleus	48.0	35.9
Bra009038.1-P	Field mustard	plastid	47.62	35.65
CDX69841	Canola	plastid	47.54	35.6
TraesCS4B01G180200.1	Wheat	cytosol	13.45	24.69
TraesCS4B01G075500.1	Wheat	nucleus	13.08	24.54
TraesCS3B01G165500.1	Wheat	nucleus	12.77	24.11
TraesCS7B01G060800.1	Wheat	plastid	12.47	23.14
TraesCS1B01G398100.1	Wheat	cytosol	10.96	21.05
TraesCS1B01G398400.1	Wheat	cytosol	6.2	20.76
TraesCS7B01G245800.1	Wheat	nucleus	14.89	18.31
TraesCS4B01G374800.1	Wheat	nucleus	13.68	17.3
TraesCS5B01G392800.1	Wheat	nucleus	14.51	16.7
TraesCS1B01G254900.1	Wheat	nucleus	13.23	16.51
TraesCS1B01G168700.3	Wheat	nucleus	12.55	16.1
TraesCS4B01G148500.1	Wheat	nucleus	14.29	15.32
TraesCS3B01G024900.1	Wheat	mitochondrion	13.98	14.84
TraesCS2B01G249700.1	Wheat	nucleus	13.68	14.33
TraesCS3B01G337600.3	Wheat	nucleus	12.17	13.47
TraesCS6B01G206600.1	Wheat	nucleus	12.77	13.14
TraesCS6B01G329000.1	Wheat	nucleus	12.77	12.81
TraesCS2B01G320800.1	Wheat	nucleus, plastid	12.09	11.2

Protein Annotations

Gene3D:1.10.10.2130	Gene3D:1.20.120.1750	MapMan:19.2.2.1.5.4.3	Gene3D:3.30.40.10	Gene3D:3.40.50.300	InterPro:DNA/RNA_helicase_DEAH_CS
InterPro:DUF1605	GO:GO:0003674	GO:GO:0003824	GO:GO:0004386	GO:GO:0016787	InterPro:Helicase-assoc_dom
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IBR_dom	InterPro:IPR001650	InterPro:IPR001841	InterPro:IPR013083
InterPro:IPR014001	InterPro:P-loop_NTPase	PFAM:PF00271	PFAM:PF01485	PFAM:PF04408	PFAM:PF07717
ScanProsite:PS00518	ScanProsite:PS00690	PFscan:PS50089	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934
PANTHER:PTHR18934:SF81	SMART:SM00490	SMART:SM00647	SMART:SM00847	SUPFAM:SSF52540	SUPFAM:SSF57850
EnsemblPlantsGene:TraesCS5B01G080500	EnsemblPlants:TraesCS5B01G080500.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	TIGR:cd00046
TIGR:cd00079	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5B:+:98836802..98843128

Molecular Weight (calculated)

148714.0 Da

IEP (calculated)

7.322

GRAVY (calculated)

-0.195

Length

1323 amino acids

Sequence
(BLAST)

0001: MNDMGLDGVS YIIVDEAHER SLNTDLLLAL VKKKLLDRVD LRLIIMSATA DANRLAEYFY GCQTFHVKGR NFPIEIKYIP DVSVDASFNT VPNSLNDAFA
0101: TAAYVNDVVR VVSVIHKNEE EGAILAFLTS QLEVEWACEN FSDASAVVLP MHGKLSHVEQ SRVFNSYPGK RKVIFCTNMA ETSLTIKEVK YVVDPGLAKE
0201: SRFVPSSGLN VLKVNWISQS SASQRAGRAG RTGAGKCYRL YSESHFRMME VHQEPEIRKV HLGTAVLRIL ALGVRDAQNF EFVDAPNPDA INMALKNLEQ
0301: LGAVKCKCNL FELTDTGRYL VKLGIEPRLG KIMLDCFDSG LRREGVILAA VMANSSSIFC RVGTNEEKHK ADLQKVRLCH QDGDLFTLLA VYKKWEDGHG
0401: NRNMWCWQNS INAKTMRRCQ ETISELENCL KHELNIIVPS YWCWNPEISS MHDKLLKRII LSSLTGNLAM FLGHEKFGYQ VISTDQAVNL HPSCSLLNYG
0501: SKPEWVVFTE ILSIPNQYLV CVTAVDHDAL YAVHSMSFIH QLEKHKLQIK VISGLGNNLL RRFCGKYGQN QHRIISHLKE ECRDDRITVE INFKNNEVVL
0601: FATRQDIEKV FCIVNGALEC EAKMLRNECL ERRLFPGRPG SSPLALFGSG AEIKHLELGK RYLTVEVLHQ NAHGINDKEL IFLVGSLTSG VANFHKSAGN
0701: FRIASDETKW GKFTFLKPED AEDAVLKLNG IEFHGSSLKV VPVCSSDNRG LPFPAVRARL SWPCNPSRGH AFGTRLLRLR EAPIVGPSVS ACEEALIREI
0801: SSFMPNKIPG QNFRVEVFPP EENNSMMRAT ITFDGSLHRE AARALDHLEG SFLPCCQPWQ MIRCKHVFHS TLSCPLHVYN VISQEVNSLL ESFRSQKGVV
0901: YNFEKTDNGI FRLKLTANAT KTIADLRRPL EILMKGNTIN HPDLTISAVQ LLLSHDGVAH LKSIEQETGT YILYDRQSLN IKVFGHQDQI ATAETKLVHA
1001: LTELLEKMPL EISLRGHNLP PDMMKKTVEN FGVDLEGFKK EMPAVNVELN KQRHLLKVWG SKEDKRRVEG MISELITSVK QNALVQLPSG SVGGSKDKER
1101: VDDSELAQDA CPICLCETED PFELESCGHI FCRACLVDQC ESAMKSHDGF PVCCLKTGCK KPFLIVDLKH LVSNEKLEDL FRASLRAFVT SRAGMYRFCS
1201: TPDCQSIYQV AAPDAETKPF VCGACYVEIC TKCHVEYHPF MSCEAYKQYK EDPDATLLEW RRGKVNVKNC PSCGYTIEKS EGCNHVECRC GSHICWACLA
1301: NFRSSEECYG HLRSAHQSFV DIV

Best Arabidopsis Sequence Match ( AT2G47250.1 )
(BLAST)

001: MGTERKRKVS LFDVMEDPSL SSKNTKSNGL GLAAAAGGGS NLINKWNGKA YSQRYFEILE KRRDLPVWLQ KDDFLNTLNS NQTLILVGET GSGKTTQIPQ
101: FVLDAVVADN SDKGRKWLVG CTQPRRVAAM SVSRRVADEM DVSIGEEVGY SIRFEDCTSS RTMLKYLTDG MLLREAMADP LLERYKVIIL DEAHERTLAT
201: DVLFGLLKEV LRNRPDLKLV VMSATLEAEK FQEYFSGAPL MKVPGRLHPV EIFYTQEPER DYLEAAIRTV VQIHMCEPPG DILVFLTGEE EIEDACRKIN
301: KEVSNLGDQV GPVKVVPLYS TLPPAMQQKI FDPAPVPLTE GGPAGRKIVV STNIAETSLT IDGIVYVIDP GFAKQKVYNP RIRVESLLVS PISKASAHQR
401: SGRAGRTRPG KCFRLYTEKS FNNDLQPQTY PEILRSNLAN TVLTLKKLGI DDLVHFDFMD PPAPETLMRA LEVLNYLGAL DDEGNLTKTG EIMSEFPLDP
501: QMSKMLIVSP EFNCSNEILS VSAMLSVPNC FVRPREAQKA ADEAKARFGH IDGDHLTLLN VYHAYKQNNE DPNWCFENFV NNRAMKSADN VRQQLVRIMS
601: RFNLKMCSTD FNSRDYYVNI RKAMLAGYFM QVAHLERTGH YLTVKDNQVV HLHPSNCLDH KPEWVIYNEY VLTTRNFIRT VTDIRGEWLV DVAQHYYDLS
701: NFPNCEAKRA LEKLYKKRER EKNESKNRK

Arabidopsis Description

Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3 [Source:UniProtKB/Swiss-Prot;Acc:O22899]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.