Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g015040.2.1 | Tomato | nucleus | 99.14 | 49.43 |
| GSMUA_Achr2P20940_001 | Banana | nucleus | 80.52 | 41.88 |
| Bra010915.1-P | Field mustard | nucleus | 82.81 | 40.99 |
| CDX90112 | Canola | nucleus | 82.81 | 40.99 |
| CDY11762 | Canola | nucleus | 82.52 | 40.91 |
| AT1G27900.1 | Thale cress | nucleus | 81.66 | 40.71 |
| KRH58751 | Soybean | nucleus | 81.09 | 40.6 |
| TraesCS4B01G075500.1 | Wheat | nucleus | 78.8 | 39.01 |
| EER87951 | Sorghum | nucleus, plastid | 78.51 | 38.87 |
| TraesCS4D01G074200.1 | Wheat | nucleus | 78.51 | 38.87 |
| TraesCS4A01G239500.2 | Wheat | nucleus | 78.51 | 38.87 |
| VIT_01s0010g02780.t01 | Wine grape | nucleus | 70.77 | 38.59 |
| Os11t0310800-01 | Rice | nucleus | 78.22 | 38.56 |
| Zm00001d045147_P015 | Maize | nucleus | 77.94 | 38.53 |
| PGSC0003DMT400023284 | Potato | nucleus | 53.3 | 25.73 |
| PGSC0003DMT400046188 | Potato | nucleus | 50.14 | 25.36 |
| PGSC0003DMT400084916 | Potato | nucleus | 55.01 | 23.97 |
| PGSC0003DMT400005723 | Potato | nucleus | 53.01 | 22.51 |
| PGSC0003DMT400039875 | Potato | nucleus | 52.72 | 19.93 |
| PGSC0003DMT400063370 | Potato | nucleus | 54.44 | 18.1 |
| PGSC0003DMT400009842 | Potato | mitochondrion | 19.2 | 17.77 |
| PGSC0003DMT400056692 | Potato | nucleus | 55.3 | 16.91 |
| PGSC0003DMT400055058 | Potato | nucleus | 39.83 | 16.28 |
| PGSC0003DMT400018531 | Potato | nucleus | 51.86 | 14.09 |
| PGSC0003DMT400000297 | Potato | nucleus | 46.13 | 12.05 |
| PGSC0003DMT400055091 | Potato | mitochondrion | 36.96 | 11.08 |
| PGSC0003DMT400041805 | Potato | nucleus | 39.54 | 8.51 |
| PGSC0003DMT400060759 | Potato | nucleus | 41.55 | 8.39 |
| PGSC0003DMT400041647 | Potato | cytosol | 0.0 | 0.0 |
| PGSC0003DMT400063366 | Potato | plastid | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.10.2130 | Gene3D:3.40.50.300 | MapMan:35.1 | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DNA/RNA_helicase_DEAH_CS | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IPR001650 | InterPro:IPR014001 | UniProt:M1B766 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 |
| EnsemblPlantsGene:PGSC0003DMG400014919 | PGSC:PGSC0003DMG400014919 | EnsemblPlants:PGSC0003DMT400038620 | ScanProsite:PS00690 | PFscan:PS51192 | PFscan:PS51194 |
| PANTHER:PTHR18934 | PANTHER:PTHR18934:SF131 | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 | UniParc:UPI00029661E0 |
| SEG:seg | : | : | : | : | : |
Description
ATP-dependent RNA helicase [Source:PGSC_GENE;Acc:PGSC0003DMG400014919]
Coordinates
chr5:+:13042784..13049586
Molecular Weight (calculated)
39185.3 Da
IEP (calculated)
9.311
GRAVY (calculated)
-0.193
Length
349 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDLPIVRFE EKIVETVKEN PVVVVIGETG SGKSTQLPQI LYRRGYAKSG IIAVTQPRRV AAVSVSRRVA QEQNVRIGEE VGYAIRFEDR TSEKTRIKYL
101: TDGVLLRESL FNPELNQYSV IILDEAHERS LMKRLIKWRH SNLKVLITSA TLDGGKVSRF FSDCPVLTVP GELFPVEIVH ISEPPKSYVE ASLRKAIDIH
201: VREPEGDILI FLTGQVRVFS PPPPNCRRFI VSTNIAETSL TVDGVVYVID SGYVKQRQYN PSTGMYSLEV VQISKVQAKQ RAGRAGRTRP GKCYRLYPST
301: VYHDDFLDAT VPEIQRSSLA GTVLYLKSLD LADMDILKFD FLDSPSGKH
101: TDGVLLRESL FNPELNQYSV IILDEAHERS LMKRLIKWRH SNLKVLITSA TLDGGKVSRF FSDCPVLTVP GELFPVEIVH ISEPPKSYVE ASLRKAIDIH
201: VREPEGDILI FLTGQVRVFS PPPPNCRRFI VSTNIAETSL TVDGVVYVID SGYVKQRQYN PSTGMYSLEV VQISKVQAKQ RAGRAGRTRP GKCYRLYPST
301: VYHDDFLDAT VPEIQRSSLA GTVLYLKSLD LADMDILKFD FLDSPSGKH
001: MANLPILQFE EKIVETVEKN SVVVIIGETG SGKSTQLSQI LHRHGYTKSG VIAITQPRRV AAVSVARRVA QELDVPLGED VGYAIRFEDR TTSKTRIKYL
101: TDGVLLRESL SNPMLDDYSV IILDEAHERS LNTDILLGLV KRLVRIRASN FKVLITSATL DGEKVSEFFS GCPVLNVPGK LYPVEILYSK ERPVSYIESS
201: LKVAIDIHVR EPEGDILIFM TGQDDIEKLV SRLEEKVRSL AEGSCMDAII YPLHGSLPPE MQVRVFSPPP PNCRRFIVST NIAETSLTVD GVVYVIDSGY
301: VKQRQYNPSS GMFSLDVIQI SKVQANQRAG RAGRTRPGKC YRLYPLAVYR DDFLDATIPE IQRTSLAGSV LYLKSLDLPD IDILKFDFLD APSSESLEDA
401: LKQLYFIDAI DENGAITRIG RTMSDLPLEP SLSRTLIEAN ETGCLSQALT VVAMLSAETT LLPARSKPSE KKRKHDEDSN LPNGSGYGDH IQLLQIFESW
501: DRTNYDPVWC KENGMQVRGM VFVKDVRRQL CQIMQKISKD RLEVGADGRK SSSRDDYRKL RKALCVGNAN QIAERMLRHN GYRTLSFQSQ LVQVHPSSVL
601: SADNDGMMPN YVVYHELIST TRPFMRNVCA VDMAWVAPIK RKIEKLNVRK LSGGPAPSFK VPEEKTELSK NNAETPAVSE NVESRIEAAR ERFLARKGQK
101: TDGVLLRESL SNPMLDDYSV IILDEAHERS LNTDILLGLV KRLVRIRASN FKVLITSATL DGEKVSEFFS GCPVLNVPGK LYPVEILYSK ERPVSYIESS
201: LKVAIDIHVR EPEGDILIFM TGQDDIEKLV SRLEEKVRSL AEGSCMDAII YPLHGSLPPE MQVRVFSPPP PNCRRFIVST NIAETSLTVD GVVYVIDSGY
301: VKQRQYNPSS GMFSLDVIQI SKVQANQRAG RAGRTRPGKC YRLYPLAVYR DDFLDATIPE IQRTSLAGSV LYLKSLDLPD IDILKFDFLD APSSESLEDA
401: LKQLYFIDAI DENGAITRIG RTMSDLPLEP SLSRTLIEAN ETGCLSQALT VVAMLSAETT LLPARSKPSE KKRKHDEDSN LPNGSGYGDH IQLLQIFESW
501: DRTNYDPVWC KENGMQVRGM VFVKDVRRQL CQIMQKISKD RLEVGADGRK SSSRDDYRKL RKALCVGNAN QIAERMLRHN GYRTLSFQSQ LVQVHPSSVL
601: SADNDGMMPN YVVYHELIST TRPFMRNVCA VDMAWVAPIK RKIEKLNVRK LSGGPAPSFK VPEEKTELSK NNAETPAVSE NVESRIEAAR ERFLARKGQK
Arabidopsis Description
Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 [Source:UniProtKB/Swiss-Prot;Acc:Q93Y16]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.