CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
nucleus: 27291164
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96553	Soybean	nucleus	99.03	98.89
KRH69191	Soybean	nucleus	95.97	95.71
VIT_07s0005g01770.t01	Wine grape	nucleus	93.33	92.31
PGSC0003DMT400023284	Potato	nucleus	91.81	91.42
Solyc01g079250.2.1	Tomato	nucleus	91.81	91.42
KRH31768	Soybean	cytosol, nucleus	70.83	88.39
TraesCS4A01G124200.2	Wheat	cytosol	88.19	88.32
KXG39505	Sorghum	cytosol	88.47	88.23
CDX76626	Canola	nucleus	87.92	88.16
CDX95715	Canola	cytosol	88.75	88.14
CDX83337	Canola	cytosol	88.47	88.11
Bra000445.1-P	Field mustard	cytosol	88.47	88.11
TraesCS4D01G181700.1	Wheat	cytosol	88.19	88.07
HORVU4Hr1G052730.3	Barley	cytosol	88.06	87.93
TraesCS4B01G180200.1	Wheat	cytosol	88.06	87.93
Zm00001d028923_P002	Maize	nucleus	88.06	87.93
CDY11413	Canola	nucleus	87.5	87.74
Bra007671.1-P	Field mustard	nucleus	87.5	87.74
Os03t0314100-01	Rice	cytosol, nucleus, plastid	65.42	83.51
GSMUA_Achr1P18470_001	Banana	cytosol	40.42	81.74
Zm00001d047601_P006	Maize	nucleus	87.36	81.37
Bra003744.1-P	Field mustard	nucleus	75.56	81.19
CDY68405	Canola	nucleus	75.0	80.6
AT5G14900.1	Thale cress	cytosol	31.53	75.42
CDX74061	Canola	cytosol	28.89	64.8
Bra001237.1-P	Field mustard	cytosol	38.06	63.43
CDX74059	Canola	nucleus	23.06	62.88
Bra001238.1-P	Field mustard	cytosol, mitochondrion	22.36	60.98
KRH21325	Soybean	nucleus	39.86	43.09
KRH70930	Soybean	nucleus	40.83	41.7
KRH69386	Soybean	cytosol	15.14	41.44
KRH75071	Soybean	nucleus	40.56	41.42
KRH12910	Soybean	cytosol, nucleus	41.53	40.13
KRH58751	Soybean	nucleus	38.19	39.45
KRG97372	Soybean	nucleus	49.03	36.5
KRH40933	Soybean	cytosol	30.83	36.45
KRH54662	Soybean	nucleus	49.31	33.94
KRH74752	Soybean	nucleus	46.94	32.75
KRH05918	Soybean	nucleus	50.42	30.33
KRH17401	Soybean	nucleus	50.42	30.17
KRH72171	Soybean	nucleus	33.33	26.67
KRH32860	Soybean	mitochondrion, nucleus, plastid	33.47	23.4
KRH23170	Soybean	nucleus	41.11	23.29
KRH10165	Soybean	nucleus	40.83	23.11
KRH38164	Soybean	nucleus	33.75	22.05
KRG90929	Soybean	plastid	33.33	21.07
KRH41772	Soybean	plastid	33.89	20.73
KRH60477	Soybean	plastid	33.47	20.42
KRH44757	Soybean	plastid	31.81	19.72
KRH76262	Soybean	nucleus	34.72	18.93
KRH65271	Soybean	nucleus	34.72	18.91
KRH13104	Soybean	mitochondrion	11.11	18.69
KRH73592	Soybean	nucleus	29.03	17.99
KRH14525	Soybean	nucleus	28.61	17.7
KRH01863	Soybean	nucleus	30.0	15.02
KRG97543	Soybean	nucleus, plastid	30.69	12.78
KRH31333	Soybean	nucleus, plastid	30.14	12.5

Protein Annotations

Gene3D:1.20.120.1080	EntrezGene:100807162	MapMan:16.4.7.3.3	Gene3D:3.40.50.300	EMBL:ACUP02002106	ncoils:Coil
InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DUF1605	EnsemblPlantsGene:GLYMA_03G221200	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006396
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	UniProt:I1JQU1	InterPro:IPR001650	InterPro:IPR014001	EnsemblPlants:KRH68290	ProteinID:KRH68290
ProteinID:KRH68290.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF04408	PFAM:PF07717
PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934	PANTHER:PTHR18934:SF193	SMART:SM00487	SMART:SM00490
SMART:SM00847	SUPFAM:SSF52540	UniParc:UPI0002339D64	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:+:42433019..42436923

Molecular Weight (calculated)

82075.0 Da

IEP (calculated)

7.400

GRAVY (calculated)

-0.380

Length

720 amino acids

Sequence
(BLAST)

001: MGTERKRKVS LFDVVDDSAA KMAKTNGGAA NNLINHWTSR PYSQRYFEIL EKRKTLPVWH QKEEFLQVLK DNQTLILVGE TGSGKTTQIP QFVLDAVELE
101: TPDKRKKMMI ACTQPRRVAA MSVSRRVAEE MDVTIGEEVG YSIRFEDCSS AKTVLKYLTD GMLLREAMTD PLLERYKVII LDEAHERTLA TDVLFGLLKE
201: VLKNRPDMKL VVMSATLEAE KFQGYFFGAP LMKVPGRLHP VEIFYTQEPE RDYLEAGIRT VVQIHMCEPP GDILVFLTGE EEIEDACRKI TKEISNLGDQ
301: VGPVKVVPLY STLPPAMQQK IFEPAPPPLK EGGPPGRKIV VSTNIAETSL TIDGIVYVID PGFAKQKVYN PRVRVESLLV SPISKASAHQ RSGRAGRTQP
401: GKCFRLYTEK SFNNDLQPQT YPEILRSNLA NTVLTLKKLG IDDLVHFDFM DPPAPETLMR ALEVLNYLGA LDDDGNLTKL GEIMSEFPLD PQMSKMLVVS
501: PEFNCSNEIL SVSAMLSVPN CFVRPREAQK AADEAKARFG HIDGDHLTLL NVYHAYKQNN EDPSWCYDNF VNHRALKSAD NVRQQLVRIM SRFNLKLCST
601: DFNSRDYYVN IRKAMLAGYF MQVAHLERTG HYLTVKDNQV VHLHPSNCLD HKPEWVIYNE YVLTSRNFIR TVTDIRGEWL VDVAPHYYDL SNFPQCEAKR
701: VLERLYKKRE KEKEEARSRR

Best Arabidopsis Sequence Match ( AT3G62310.1 )
(BLAST)

001: MGTERKRKIS LFDVMDDPSA PAKNAKTSGL PDGGINSLIN KWNGKPYSQR YYDILEKRRT LPVWLQKEEF LKTLNNNQTL ILVGETGSGK TTQIPQFVID
101: AVDAETSDKR RKWLVGCTQP RRVAAMSVSR RVAEEMDVTI GEEVGYSIRF EDCSSPRTVL KYLTDGMLLR EAMADPLLER YKVIILDEAH ERTLATDVLF
201: GLLKEVLKNR PDLKLVVMSA TLEAEKFQDY FSGAPLMKVP GRLHPVEIFY TQEPERDYLE AAIRTVVQIH MCEPPGDILV FLTGEEEIED ACRKINKEVG
301: NLGDQVGPIK VVPLYSTLPP AMQQKIFDPA PEPVTEGGPP GRKIVVSTNI AETSLTIDGI VYVIDPGFAK QKVYNPRIRV ESLLVSPISK ASAHQRSGRA
401: GRTRPGKCFR LYTEKSFNND LQPQTYPEIL RSNLANTVLT LKKLGIDDLV HFDFMDPPAP ETLMRALEVL NYLGALDDDG NLTKTGEIMS EFPLDPQMAK
501: MLIVSPEFNC SNEILSVSAM LSVPNCFIRP REAQKAADEA KARFGHIEGD HLTLLNVYHA FKQNNEDPNW CYENFINNRA MKSADNVRQQ LVRIMSRFNL
601: KMCSTDFNSR DYYINIRKAM LAGYFMQVAH LERTGHYLTV KDNQVVHLHP SNCLDHKPEW VIYNEYVLTS RNFIRTVTDI RGEWLVDVAS HYYDLSNFPN
701: CEAKRVIEKL YKKREREKEE SKKNRK

Arabidopsis Description

Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZQ9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.