Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400018531 | Potato | nucleus | 98.37 | 98.37 |
| VIT_01s0010g02920.t01 | Wine grape | nucleus | 61.79 | 90.74 |
| Solyc12g089010.1.1 | Tomato | nucleus | 53.85 | 85.43 |
| KRH23170 | Soybean | nucleus | 77.82 | 78.68 |
| TraesCS3D01G264900.1 | Wheat | plastid | 56.03 | 78.18 |
| CDX85676 | Canola | nucleus | 75.64 | 77.88 |
| KRH10165 | Soybean | nucleus | 77.04 | 77.83 |
| Bra023387.1-P | Field mustard | nucleus | 75.56 | 77.8 |
| AT5G13010.1 | Thale cress | nucleus | 75.72 | 77.53 |
| CDX91151 | Canola | nucleus | 75.33 | 77.5 |
| CDY23802 | Canola | nucleus | 30.97 | 75.81 |
| Os07t0508000-01 | Rice | nucleus | 73.31 | 73.59 |
| HORVU2Hr1G047870.2 | Barley | nucleus | 72.3 | 73.56 |
| TraesCS2B01G249700.1 | Wheat | nucleus | 72.22 | 73.48 |
| TraesCS2A01G233700.1 | Wheat | nucleus | 72.14 | 73.4 |
| KXG36287 | Sorghum | nucleus | 73.31 | 73.31 |
| Zm00001d006459_P003 | Maize | plastid | 71.67 | 68.42 |
| TraesCS2D01G231900.1 | Wheat | nucleus | 72.45 | 66.36 |
| Solyc05g015040.2.1 | Tomato | nucleus | 22.49 | 41.29 |
| Solyc03g115390.2.1 | Tomato | nucleus | 29.18 | 41.25 |
| Solyc01g079250.2.1 | Tomato | nucleus | 23.11 | 41.08 |
| Solyc09g097820.2.1 | Tomato | nucleus | 21.95 | 40.69 |
| Solyc12g017700.1.1 | Tomato | nucleus | 27.78 | 40.29 |
| Solyc09g008120.2.1 | Tomato | nucleus | 22.26 | 40.23 |
| Solyc01g110990.2.1 | Tomato | nucleus | 32.61 | 37.71 |
| Solyc07g039550.2.1 | Tomato | nucleus | 33.54 | 36.22 |
| Solyc01g006970.2.1 | Tomato | nucleus | 19.53 | 24.35 |
| Solyc01g006710.2.1 | Tomato | mitochondrion | 19.92 | 21.99 |
| Solyc04g007510.2.1 | Tomato | plastid | 19.3 | 21.49 |
| Solyc03g118920.2.1 | Tomato | mitochondrion, nucleus | 19.92 | 21.32 |
| Solyc01g095710.2.1 | Tomato | nucleus | 20.7 | 19.84 |
| Solyc07g044930.2.1 | Tomato | nucleus | 16.26 | 17.43 |
| Solyc01g103690.2.1 | Tomato | nucleus | 17.74 | 15.86 |
| Solyc11g010310.1.1 | Tomato | nucleus | 19.38 | 14.6 |
| Solyc04g014210.2.1 | Tomato | nucleus | 19.3 | 14.34 |
Protein Annotations
| Gene3D:1.20.120.1080 | MapMan:16.4.7.1.6 | Gene3D:3.40.50.300 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DUF1605 |
| GO:GO:0000166 | GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 |
| GO:GO:0004004 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005681 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016787 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IPR001650 | InterPro:IPR014001 | UniProt:K4D233 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 |
| PFAM:PF04408 | PFAM:PF07717 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR18934 | PANTHER:PTHR18934:SF91 |
| SMART:SM00487 | SMART:SM00490 | SMART:SM00847 | SUPFAM:SSF52540 | EnsemblPlantsGene:Solyc10g076910.1 | EnsemblPlants:Solyc10g076910.1.1 |
| UniParc:UPI0002769F1C | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr10:-:59875691..59886592
Molecular Weight (calculated)
144004.0 Da
IEP (calculated)
6.240
GRAVY (calculated)
-0.627
Length
1285 amino acids
Sequence
(BLAST)
(BLAST)
0001: MQKGDAGPID LDKTTTTLEP DKTSSGGLFV PGKERVVFKP SERKSLLGLD ALAIAKRGGA TVESEFKVPR ERLASIASSL DEDEESSAVS GIDELGHTAS
0101: NVSRNNVRRR YRESYASETS ASGSAVTDER GDAETVVRSH LNENTEVPPV SSGSLRSTIS RGESVDRERD GSEYRDNYRS ESREGRRRDR RTSREERHHR
0201: DSSRGYEREY DGDDGRKRSR YDGFRRTPGR SEWDDGRWEW QDTPRRDSRS SSSSRRYEPS PSPKFLGASP DSRLVSPWLG DHTPQSAGAA SPWDSVAPSP
0301: TPIRASGSSV RSSSSRYGAK SSLIMSSTGG ALSEDGGDDT NGASEDQNEE ITESMRLEME YNSDRAWYDR EEGSTVFEGD GSSAFLGDEA SFQKKEVELA
0401: KKLVRRDGSK MSLAQSKRLS QLTADNAQWE DRQLLRSGAV RGTEVQTEFD DEDERKVILL VHDTKPPFLD GRIVFTKQAE PIMPIKDPTS DMAIISRKGS
0501: ALVREIREKQ NMHKSRQRFW ELAGSKLGDI LGVEKSAEQV DADTATVGED GEVDFKGEAR FSQHLKKGEA VSDFALSKTL SQQRQYLPIF SVRDDLLQVV
0601: RENQVVVVVG ETGSGKTTQL TQYLHEDGYT SNGIVGCTQP RRVAAMSVAK RVSEEMETEL GDKVGYAIRF EDVTGPTTVI KYMTDGVLLR ETLKDPDLEK
0701: YRVIVMDEAH ERSLNTDVLF GILKKVVARR RDFKLIVTSA TLNAQKFSNF FGSVPIFHIP GRTFPVNKLY SKTPCEDYVE AAVKQAMTIH ITSAPGDILI
0801: FMTGQDEIEA TCYALSERME QLTSSTKQAV PNLLILPIYS QLPADLQAKI FQKAEDGARK CIVATNIAET SLTVDGIYYV IDTGYGKMKV YNPRMGMDAL
0901: QVFPISRAAA DQRAGRAGRT GPGTCYRLYT ENAYENEMLQ SPVPEIQRTN LGNVVLLLKS LKIQNLLDFD FMDPPPQDNI LNSMYQLWVL GALNNVGDLT
1001: SLGWKMVEFP LDPPLAKMLL MGEQLECLNE VLTIVSMLSV PSVFFRPKDR AEESDAAREK FFVPESDHLT LLNVYQQWKA NQYRGDWCND HYLQVKGLRK
1101: AREVRSQLLD ILKTLKIPLT SCGPDWDVVR KAICSAYFHN AARLKGVGEY VNCRNGMPCH LHPTSALYGL GYTPDNVVYH ELILTSKEYM QCVTAVEPHW
1201: LAELGPMFFS VKDSDTSMLE HKKKQKEEKT AMEEEMEKLR KVQAEADRRN KEKEKEKRAK ELQQVSMPGL KKGSTTYLRP KRLGL
0101: NVSRNNVRRR YRESYASETS ASGSAVTDER GDAETVVRSH LNENTEVPPV SSGSLRSTIS RGESVDRERD GSEYRDNYRS ESREGRRRDR RTSREERHHR
0201: DSSRGYEREY DGDDGRKRSR YDGFRRTPGR SEWDDGRWEW QDTPRRDSRS SSSSRRYEPS PSPKFLGASP DSRLVSPWLG DHTPQSAGAA SPWDSVAPSP
0301: TPIRASGSSV RSSSSRYGAK SSLIMSSTGG ALSEDGGDDT NGASEDQNEE ITESMRLEME YNSDRAWYDR EEGSTVFEGD GSSAFLGDEA SFQKKEVELA
0401: KKLVRRDGSK MSLAQSKRLS QLTADNAQWE DRQLLRSGAV RGTEVQTEFD DEDERKVILL VHDTKPPFLD GRIVFTKQAE PIMPIKDPTS DMAIISRKGS
0501: ALVREIREKQ NMHKSRQRFW ELAGSKLGDI LGVEKSAEQV DADTATVGED GEVDFKGEAR FSQHLKKGEA VSDFALSKTL SQQRQYLPIF SVRDDLLQVV
0601: RENQVVVVVG ETGSGKTTQL TQYLHEDGYT SNGIVGCTQP RRVAAMSVAK RVSEEMETEL GDKVGYAIRF EDVTGPTTVI KYMTDGVLLR ETLKDPDLEK
0701: YRVIVMDEAH ERSLNTDVLF GILKKVVARR RDFKLIVTSA TLNAQKFSNF FGSVPIFHIP GRTFPVNKLY SKTPCEDYVE AAVKQAMTIH ITSAPGDILI
0801: FMTGQDEIEA TCYALSERME QLTSSTKQAV PNLLILPIYS QLPADLQAKI FQKAEDGARK CIVATNIAET SLTVDGIYYV IDTGYGKMKV YNPRMGMDAL
0901: QVFPISRAAA DQRAGRAGRT GPGTCYRLYT ENAYENEMLQ SPVPEIQRTN LGNVVLLLKS LKIQNLLDFD FMDPPPQDNI LNSMYQLWVL GALNNVGDLT
1001: SLGWKMVEFP LDPPLAKMLL MGEQLECLNE VLTIVSMLSV PSVFFRPKDR AEESDAAREK FFVPESDHLT LLNVYQQWKA NQYRGDWCND HYLQVKGLRK
1101: AREVRSQLLD ILKTLKIPLT SCGPDWDVVR KAICSAYFHN AARLKGVGEY VNCRNGMPCH LHPTSALYGL GYTPDNVVYH ELILTSKEYM QCVTAVEPHW
1201: LAELGPMFFS VKDSDTSMLE HKKKQKEEKT AMEEEMEKLR KVQAEADRRN KEKEKEKRAK ELQQVSMPGL KKGSTTYLRP KRLGL
0001: MGVDPFKTTE TLEADKETNG GVPVKDKLTF KAPERKSRLG LDARAIEKKD NAKTEGEFKV PKKSAISVTS SLDEEDKSDV SGLDFGTENT RPVHSSRRYR
0101: EKSSRSQSAQ ESTVTTENAG TSDISITPRT LSCTSSYERG GSNRHREEHR RDRSETPRSR QRNTYDEMDH YRRRESYRQS DRDYHGEKRR RYNSDWRTPG
0201: RSDWDDGQDE WERSPHGDRG SSYSRRPQPS PSPMLAAASP DARLASPWLD TPRSTMSSAS PWDMGAPSPI PIRASGSSIR SSSSRYGGRS NQLAYSREGD
0301: LTNEGHSDED RSQGAEEFKH EITETMRVEM EYQSDRAWYD TDEGNSLFDA DSASFFLGDD ASLQKKETEL AKRLVRRDGS KMSLAQSKKY SQLNADNAQW
0401: EDRQLLRSGA VRGTEVQTEF DSEEERKAIL LVHDTKPPFL DGRVVYTKQA EPVMPVKDPT SDMAIISRKG SGLVKEIREK QSANKSRQRF WELAGSNLGN
0501: ILGIEKSAEQ IDADTAVVGD DGEVDFKGEA KFAQHMKKGE AVSEFAMSKT MAEQRQYLPI FSVRDELLQV IRENQVIVVV GETGSGKTTQ LTQYLHEDGY
0601: TINGIVGCTQ PRRVAAMSVA KRVSEEMETE LGDKIGYAIR FEDVTGPNTV IKYMTDGVLL RETLKDSDLD KYRVVVMDEA HERSLNTDVL FGILKKVVAR
0701: RRDFKLIVTS ATLNAQKFSN FFGSVPIFNI PGRTFPVNIL YSKTPCEDYV EAAVKQAMTI HITSPPGDIL IFMTGQDEIE AACFSLKERM EQLVSSSSRE
0801: ITNLLILPIY SQLPADLQAK IFQKPEDGAR KCIVATNIAE TSLTVDGIYY VIDTGYGKMK VFNPRMGMDA LQVFPISRAA SDQRAGRAGR TGPGTCYRLY
0901: TESAYLNEML PSPVPEIQRT NLGNVVLLLK SLKIDNLLDF DFMDPPPQEN ILNSMYQLWV LGALNNVGGL TDLGWKMVEF PLDPPLAKML LMGERLDCID
1001: EVLTIVSMLS VPSVFFRPKE RAEESDAARE KFFVPESDHL TLLNVYQQWK EHDYRGDWCN DHYLQVKGLR KAREVRSQLL DILKQLKIEL RSCGPDWDIV
1101: RKAICSAYFH NSARLKGVGE YVNCRTGMPC HLHPSSALYG LGYTPDYVVY HELILTTKEY MQCATSVEPH WLAELGPMFF SVKDSDTSML EHKKKQKEEK
1201: SGMEEEMEKL RRDQVESELR SKERERKKRA KQQQQISGPG LKKGTTFLRP KKLGL
0101: EKSSRSQSAQ ESTVTTENAG TSDISITPRT LSCTSSYERG GSNRHREEHR RDRSETPRSR QRNTYDEMDH YRRRESYRQS DRDYHGEKRR RYNSDWRTPG
0201: RSDWDDGQDE WERSPHGDRG SSYSRRPQPS PSPMLAAASP DARLASPWLD TPRSTMSSAS PWDMGAPSPI PIRASGSSIR SSSSRYGGRS NQLAYSREGD
0301: LTNEGHSDED RSQGAEEFKH EITETMRVEM EYQSDRAWYD TDEGNSLFDA DSASFFLGDD ASLQKKETEL AKRLVRRDGS KMSLAQSKKY SQLNADNAQW
0401: EDRQLLRSGA VRGTEVQTEF DSEEERKAIL LVHDTKPPFL DGRVVYTKQA EPVMPVKDPT SDMAIISRKG SGLVKEIREK QSANKSRQRF WELAGSNLGN
0501: ILGIEKSAEQ IDADTAVVGD DGEVDFKGEA KFAQHMKKGE AVSEFAMSKT MAEQRQYLPI FSVRDELLQV IRENQVIVVV GETGSGKTTQ LTQYLHEDGY
0601: TINGIVGCTQ PRRVAAMSVA KRVSEEMETE LGDKIGYAIR FEDVTGPNTV IKYMTDGVLL RETLKDSDLD KYRVVVMDEA HERSLNTDVL FGILKKVVAR
0701: RRDFKLIVTS ATLNAQKFSN FFGSVPIFNI PGRTFPVNIL YSKTPCEDYV EAAVKQAMTI HITSPPGDIL IFMTGQDEIE AACFSLKERM EQLVSSSSRE
0801: ITNLLILPIY SQLPADLQAK IFQKPEDGAR KCIVATNIAE TSLTVDGIYY VIDTGYGKMK VFNPRMGMDA LQVFPISRAA SDQRAGRAGR TGPGTCYRLY
0901: TESAYLNEML PSPVPEIQRT NLGNVVLLLK SLKIDNLLDF DFMDPPPQEN ILNSMYQLWV LGALNNVGGL TDLGWKMVEF PLDPPLAKML LMGERLDCID
1001: EVLTIVSMLS VPSVFFRPKE RAEESDAARE KFFVPESDHL TLLNVYQQWK EHDYRGDWCN DHYLQVKGLR KAREVRSQLL DILKQLKIEL RSCGPDWDIV
1101: RKAICSAYFH NSARLKGVGE YVNCRTGMPC HLHPSSALYG LGYTPDYVVY HELILTTKEY MQCATSVEPH WLAELGPMFF SVKDSDTSML EHKKKQKEEK
1201: SGMEEEMEKL RRDQVESELR SKERERKKRA KQQQQISGPG LKKGTTFLRP KKLGL
Arabidopsis Description
CUVPre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 [Source:UniProtKB/Swiss-Prot;Acc:F4K2E9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.