Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY60185 | Canola | nucleus | 95.24 | 95.46 |
| AT4G16680.2 | Thale cress | nucleus | 72.59 | 78.52 |
| Os08t0335000-00 | Rice | cytosol, nucleus | 28.46 | 66.76 |
| CDY37024 | Canola | cytosol, mitochondrion | 24.27 | 64.51 |
| PGSC0003DMT400005723 | Potato | nucleus | 56.45 | 59.12 |
| GSMUA_Achr4P23370_001 | Banana | nucleus | 51.45 | 59.07 |
| Zm00001d049980_P001 | Maize | plasma membrane | 46.46 | 57.31 |
| Solyc12g017700.1.1 | Tomato | nucleus | 56.45 | 54.85 |
| CDY26898 | Canola | nucleus | 62.14 | 51.25 |
| CDY32278 | Canola | endoplasmic reticulum | 62.14 | 51.25 |
| KXG30390 | Sorghum | nucleus | 60.86 | 50.1 |
| TraesCS4B01G374800.1 | Wheat | nucleus | 60.16 | 49.52 |
| EES02741 | Sorghum | nucleus | 60.16 | 49.52 |
| TraesCS4D01G362600.1 | Wheat | nucleus | 60.16 | 49.52 |
| CDY68405 | Canola | nucleus | 37.86 | 48.66 |
| CDX74061 | Canola | cytosol | 17.54 | 47.04 |
| CDY23338 | Canola | cytosol | 22.76 | 46.45 |
| HORVU4Hr1G088270.17 | Barley | mitochondrion | 57.84 | 46.11 |
| CDY11413 | Canola | nucleus | 38.21 | 45.82 |
| CDX76626 | Canola | nucleus | 38.1 | 45.68 |
| CDX74059 | Canola | nucleus | 13.94 | 45.45 |
| CDX95715 | Canola | cytosol | 37.86 | 44.97 |
| CDX83337 | Canola | cytosol | 37.75 | 44.95 |
| CDX78859 | Canola | nucleus | 35.66 | 43.98 |
| CDX99466 | Canola | nucleus | 35.66 | 43.86 |
| CDY36075 | Canola | nucleus | 32.64 | 41.69 |
| CDY34567 | Canola | nucleus | 32.06 | 41.63 |
| CDX85017 | Canola | cytosol, plastid | 34.38 | 41.0 |
| CDY16154 | Canola | nucleus, plastid | 34.15 | 40.66 |
| CDY11762 | Canola | nucleus | 32.87 | 40.2 |
| CDX90112 | Canola | nucleus | 32.87 | 40.14 |
| CDY32702 | Canola | nucleus | 32.17 | 40.03 |
| CDY02818 | Canola | nucleus | 30.78 | 39.91 |
| CDX83624 | Canola | nucleus | 45.64 | 35.25 |
| CDY13640 | Canola | nucleus | 45.64 | 34.93 |
| CDY23802 | Canola | nucleus | 19.05 | 31.24 |
| CDX91491 | Canola | nucleus | 2.21 | 30.16 |
| CDY51663 | Canola | nucleus | 2.21 | 30.16 |
| CDX85676 | Canola | nucleus | 39.84 | 27.48 |
| CDX91151 | Canola | nucleus | 39.72 | 27.38 |
| CDX79642 | Canola | nucleus, vacuole | 27.29 | 22.71 |
| CDX84588 | Canola | plastid, vacuole | 27.18 | 22.61 |
| CDY48353 | Canola | nucleus | 29.62 | 20.85 |
| CDY34159 | Canola | nucleus | 29.73 | 20.7 |
| CDY40601 | Canola | nucleus, plastid | 27.99 | 20.41 |
| CDX93688 | Canola | plastid | 27.87 | 20.34 |
| CDY57512 | Canola | nucleus | 26.6 | 20.18 |
| CDY17694 | Canola | nucleus | 26.6 | 20.18 |
| CDX98799 | Canola | mitochondrion | 26.48 | 19.76 |
| CDX70187 | Canola | mitochondrion | 26.48 | 19.72 |
| CDY10756 | Canola | nucleus | 23.81 | 18.82 |
| CDY10215 | Canola | nucleus | 24.39 | 16.36 |
| CDY39917 | Canola | nucleus | 26.6 | 16.21 |
| CDX97797 | Canola | nucleus | 24.27 | 16.19 |
| CDY29164 | Canola | nucleus | 26.6 | 16.08 |
| CDY29644 | Canola | nucleus | 24.04 | 15.84 |
| CDY63687 | Canola | nucleus, plastid | 19.86 | 15.41 |
| CDX78376 | Canola | plastid | 27.87 | 13.66 |
| CDX81170 | Canola | plastid | 27.87 | 13.61 |
| CDX96996 | Canola | nucleus | 27.41 | 13.34 |
| CDX69841 | Canola | plastid | 27.18 | 13.24 |
Protein Annotations
| Gene3D:1.20.120.1080 | MapMan:16.4.7.1.5 | Gene3D:3.40.50.300 | GO:A0A078HTB7 | UniProt:A0A078HTB7 | EnsemblPlants:CDY40514 |
| ProteinID:CDY40514 | ProteinID:CDY40514.1 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DNA/RNA_helicase_DEAH_CS | InterPro:DUF1605 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00069815001 | InterPro:Helicase-assoc_dom | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IPR001650 | InterPro:IPR014001 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF04408 |
| PFAM:PF07717 | PIRSF:PIRSF005496 | ScanProsite:PS00690 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR18934 |
| PANTHER:PTHR18934:SF117 | SMART:SM00487 | SMART:SM00490 | SMART:SM00847 | SUPFAM:SSF52540 | UniParc:UPI0004EEFF2D |
| SEG:seg | : | : | : | : | : |
Description
BnaC01g19980DBnaC01g19980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HTB7]
Coordinates
chrLK032473:+:94450..97131
Molecular Weight (calculated)
98605.2 Da
IEP (calculated)
8.646
GRAVY (calculated)
-0.572
Length
861 amino acids
Sequence
(BLAST)
(BLAST)
001: MNDMEMHSKV EVRSSSVVDM DLDVIEETVD RSVSEEKPSL RSVSVKFKLN IAKKSFRKRS REESEKVEDE EEEDGKVLGN YEIARLREES RREYLKKREN
101: KKVEEFKEQV EFELSRFQGI PDAYDQRKRF DVARQRCGEV TRERGKTEKE AWEDHQAQKA TVRFGAKDKK QVCDGYEFVF DEVASFVETS VEAEKDRGYD
201: ERRVAKDDRK MLPIYAYRDE LLKLVEENQV LVIVGETGSG KTTQIPQYLQ EAGYTKRGKI GCTQPRRVAA MSVASRVAQE LGVKLGHQVG YSIRFEDCTS
301: EKTVIKYMTD GMLLRELLIE PKLDSYSVII VDEAHERTLS TDILFGLVKD LAKARPDLRL IISSATLEAK KFSEYFDSAR IYMIPGRRYP VEKLFQRCPE
401: PARLETAVRT VFQIHQREPL GDVLVFLTGQ EEIETAETKL KERMKDLGSK SSEIIICPIY SNLPTELQAK VFDPAPKGTR KVVLATNIAE TSLTIEGIRY
501: VVDPGYCKIN SYNPKTGMES LLETPISKAS AEQRAGRSGR TGPGKCFRLY NVKDLEPTTI PEVQRANLAS VVLTLKSLGI DDVFNFDFMD PPPEKSLMKA
601: LELLYALGAL DGKSDITKLG ERMVEFPVDP MLSKMIVGSE KYKCSAEVIT IAAMLSTGSS IFYRPSRNQQ YLADNARMSF YTDNAGDHIA LLRVYNSWKE
701: MNYSSQWCYE NYIQSKSMRR ARDIREQLAG LLKRIGVELT SNSEDLDAVK KAILAGFFPH SAKLQKDGSY RRVREPQTVY VHPSSGLFGA SPKKWLVYHE
801: LVLTTKEYMR HTTEMKPEWL VEIAPHYYKL KDIEETRTKK NQSRNIRSLM LKVDTNKKAK R
101: KKVEEFKEQV EFELSRFQGI PDAYDQRKRF DVARQRCGEV TRERGKTEKE AWEDHQAQKA TVRFGAKDKK QVCDGYEFVF DEVASFVETS VEAEKDRGYD
201: ERRVAKDDRK MLPIYAYRDE LLKLVEENQV LVIVGETGSG KTTQIPQYLQ EAGYTKRGKI GCTQPRRVAA MSVASRVAQE LGVKLGHQVG YSIRFEDCTS
301: EKTVIKYMTD GMLLRELLIE PKLDSYSVII VDEAHERTLS TDILFGLVKD LAKARPDLRL IISSATLEAK KFSEYFDSAR IYMIPGRRYP VEKLFQRCPE
401: PARLETAVRT VFQIHQREPL GDVLVFLTGQ EEIETAETKL KERMKDLGSK SSEIIICPIY SNLPTELQAK VFDPAPKGTR KVVLATNIAE TSLTIEGIRY
501: VVDPGYCKIN SYNPKTGMES LLETPISKAS AEQRAGRSGR TGPGKCFRLY NVKDLEPTTI PEVQRANLAS VVLTLKSLGI DDVFNFDFMD PPPEKSLMKA
601: LELLYALGAL DGKSDITKLG ERMVEFPVDP MLSKMIVGSE KYKCSAEVIT IAAMLSTGSS IFYRPSRNQQ YLADNARMSF YTDNAGDHIA LLRVYNSWKE
701: MNYSSQWCYE NYIQSKSMRR ARDIREQLAG LLKRIGVELT SNSEDLDAVK KAILAGFFPH SAKLQKDGSY RRVREPQTVY VHPSSGLFGA SPKKWLVYHE
801: LVLTTKEYMR HTTEMKPEWL VEIAPHYYKL KDIEETRTKK NQSRNIRSLM LKVDTNKKAK R
001: MREVIEFRYK RALYELVKKT EDDDDVEGYR FPDAYDQEGC IDQKKRFDVA KERYCERRRS GRVVTEQEAW EDHQAQKARV RFGAKDKKQV VDGYEFVFDD
101: LTGFVEESSE AETGKHRGCY SKTAAEKARE GREFLPIHGY REELLKLIEE NQVLVIVGET GSGKTTQIPQ YLQEAGYTKR GKIGCTQPRR VAAMSVASRV
201: AQEVGVKLGH EVGYSIRFED CTSEKTVIKY MTDGMLLREL LIEPKLDSYS VIIIDEAHER TLSTDILFAL VKDVAKVRPD LRLIISSATL EAKKFSEYFD
301: SARIYLIPGR RYPVEKLFRK CPEPDYLETV IRTVVQIHQT EAIGDILVFL TGQEEIETVE TNLKRRMMDL GTKGSEIIIC PIYSNLPTPL QAKVFEPAPK
401: GTRKVVLATN IAETSLTIDG VKYVIDPGYC KINSYNPRTG MESLLVTPIS KASAAQRAGR SGRTGPGKCF RLYNIKDLEP TTIPEIQRAN LASVVLTLKS
501: LGIQDVFNFD FMDPPPENAL LKALELLYAL GALDEIGEIT KVGERMVEFP VDPMLSKMIV GSEKYKCSKE IITIAAMLSV GNSVFYRPKN QQVFADKARM
601: DFYEDTENVG DHIALLRVYN SWKEENYSTQ WCCEKFIQSK SMKRARDIRD QLLGLLNKIG VELTSNPNDL DAIKKAILAG FFPHSAKLQK NGSYRRVKEP
701: QTVYVHPNSG LFGASPSKWL VYHELVLTTK EYMRHTTEMK PEWLIEIAPH YYKLKDIEDT RPKKTQRRIE EASTSKVDTN KKTRTSKVDT NKKSKR
101: LTGFVEESSE AETGKHRGCY SKTAAEKARE GREFLPIHGY REELLKLIEE NQVLVIVGET GSGKTTQIPQ YLQEAGYTKR GKIGCTQPRR VAAMSVASRV
201: AQEVGVKLGH EVGYSIRFED CTSEKTVIKY MTDGMLLREL LIEPKLDSYS VIIIDEAHER TLSTDILFAL VKDVAKVRPD LRLIISSATL EAKKFSEYFD
301: SARIYLIPGR RYPVEKLFRK CPEPDYLETV IRTVVQIHQT EAIGDILVFL TGQEEIETVE TNLKRRMMDL GTKGSEIIIC PIYSNLPTPL QAKVFEPAPK
401: GTRKVVLATN IAETSLTIDG VKYVIDPGYC KINSYNPRTG MESLLVTPIS KASAAQRAGR SGRTGPGKCF RLYNIKDLEP TTIPEIQRAN LASVVLTLKS
501: LGIQDVFNFD FMDPPPENAL LKALELLYAL GALDEIGEIT KVGERMVEFP VDPMLSKMIV GSEKYKCSKE IITIAAMLSV GNSVFYRPKN QQVFADKARM
601: DFYEDTENVG DHIALLRVYN SWKEENYSTQ WCCEKFIQSK SMKRARDIRD QLLGLLNKIG VELTSNPNDL DAIKKAILAG FFPHSAKLQK NGSYRRVKEP
701: QTVYVHPNSG LFGASPSKWL VYHELVLTTK EYMRHTTEMK PEWLIEIAPH YYKLKDIEDT RPKKTQRRIE EASTSKVDTN KKTRTSKVDT NKKSKR
Arabidopsis Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:TAIR;Acc:AT4G16680]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.