Factsheet for Os06t0343100-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0301500-01	Rice	nucleus	43.17	85.71
CDY51663	Canola	nucleus	4.98	85.71
CDX91491	Canola	nucleus	4.89	84.13
PGSC0003DMT400084916	Potato	nucleus	60.24	81.52
CDY23338	Canola	cytosol	31.64	81.28
EES15324	Sorghum	nucleus	79.98	80.95
TraesCS7D01G341800.1	Wheat	nucleus	78.32	78.47
TraesCS7B01G245800.1	Wheat	nucleus	77.58	78.16
KRG97372	Soybean	nucleus	65.31	73.22
GSMUA_Achr10P...	Banana	nucleus	64.02	71.18
CDX83624	Canola	nucleus	72.05	70.04
CDY13640	Canola	nucleus	72.14	69.51
VIT_08s0056g00470.t01	Wine grape	nucleus	74.17	68.43
KRH05918	Soybean	nucleus	74.63	67.59
Solyc01g110990.2.1	Tomato	nucleus	69.1	67.42
KRH17401	Soybean	nucleus	74.82	67.41
Bra040091.1-P	Field mustard	nucleus	49.08	67.26
AT3G26560.1	Thale cress	nucleus	72.32	67.12
Solyc07g039550.2.1	Tomato	nucleus	73.52	66.97
Bra025211.1-P	Field mustard	nucleus	72.14	66.78
PGSC0003DMT400056692	Potato	nucleus	69.19	65.73
Zm00001d031581_P002	Maize	nucleus	77.95	63.82
Os08t0335000-00	Rice	cytosol, nucleus	19.28	56.95
Os03t0314100-01	Rice	cytosol, nucleus, plastid	25.83	49.65
Os01t0212100-01	Rice	nucleus	29.52	45.71
Os06t0192500-02	Rice	mitochondrion	16.7	44.36
Os11t0310800-01	Rice	nucleus	26.29	40.25
Os05t0389800-01	Rice	nucleus	37.73	38.22
Os07t0508000-01	Rice	nucleus	36.53	30.94
Os10t0471350-01	Rice	nucleus	24.26	26.35
Os01t0118100-01	Rice	cytosol, mitochondrion, nucleus	17.34	22.98
Os03t0748800-01	Rice	mitochondrion	24.26	22.87
Os02t0736600-01	Rice	nucleus	24.17	20.6
Os01t0767700-01	Rice	nucleus	20.94	18.56
Os07t0621500-01	Rice	cytosol, nucleus	14.48	12.2
Os04t0432200-00	Rice	extracellular	0.37	5.48
Os02t0736800-01	Rice	mitochondrion	0.0	0.0

Protein Annotations

Gene3D:1.20.120.1080	Gene3D:2.40.50.140	Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:9267698	ProteinID:BAD61636.1
ProteinID:BAF19488.1	ProteinID:BAS97636.1	ProteinID:BAS97637.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA/RNA_helicase_DEAH_CS
InterPro:DUF1605	GO:GO:0000166	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005681	GO:GO:0005737	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	InterPro:Helicase-assoc_dom	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR003029	InterPro:IPR014001	InterPro:NA-bd_OB-fold	EnsemblPlantsGene:Os06g0343100
EnsemblPlants:Os06t0343100-01	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF00575	PFAM:PF04408
PFAM:PF07717	ScanProsite:PS00690	PFscan:PS50126	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR18934
PANTHER:PTHR18934:SF120	UniProt:Q5Z9X4	InterPro:S1_dom	InterPro:S1_domain	SMART:SM00316	SMART:SM00487
SMART:SM00490	SMART:SM00847	SUPFAM:SSF50249	SUPFAM:SSF52540	UniParc:UPI000045060B	RefSeq:XP_015643744.1
RefSeq:XP_015643745.1	SEG:seg	:	:	:	:

Description

Similar to ATP-dependent helicase DHX8 (RNA helicase HRH1) (DEAH-box protein 8). (Os06t0343100-01);Similar to predicted protein. (Os06t0343100-02)

Coordinates

chr6:-:13723595..13727109

Molecular Weight (calculated)

121412.0 Da

IEP (calculated)

6.833

GRAVY (calculated)

-0.412

Length

1084 amino acids

Sequence
(BLAST)

0001: MVAAKVSTPA GGAVRDGLRR LTQLSLVSKV CSELEAHLGV GDRVLAEFIV DLGRASPSVA DFDAKLKAHG ADLPDYLART LHTVIHAIPT HADDAPAPAP
0101: QNPASRGTGA RVCGKDKAEE RVRDGDPGLY QVCRGKVTGL ADAGCFVRLD DARGREGLVH VSEMPGRRIA VKRGQEVFVK IVSVQGRNLG LSMRDVDQDT
0201: GKDLLPLQRA RGEDDVPRPM ANPWTDRAAA TRRRTGVSGI VIPEDNQTGT ASSRRPIRRM SSPERWEMKQ LIASGVLNAK DYPAFDDEDS EGMNYQEEGV
0301: EEELEIELNE DEPAFLRGQG RSTIDVSPVR ISTNPDGSLS RAAVLQSALI KEWRDIRNED QRALVDSIPK DLNRPWEDPV PEVGGRYLAQ ELRGVGLSAE
0401: SMPEWKKEAY GKTVTFGQTS RLSILEQRQS LPIFRLKNEL IEAVRDNQVL VVIGETGSGK TTQVTQYLAE AGYITRGKIA CTQPRRVAAE SVAKRVSEEF
0501: GCRLGEEVGY SIRFDDHTGP DTVIKYMTDG MLLREILLDT DLSSYSVVML DEAHERTIYT DILFALLKKL IRRRTDLKLI VTSATLDAEK FSGYFFDCNI
0601: FTIPGRTYPV EILYSKQPES DYMHAALLTV SQIHLTEPEG DILLFLTGQE EIDHACQCLY ERMKSLGRNV PELLIYAVYS AQPAEMQSKI FEPTPPGKRK
0701: VVVATNIAEA SITIDGIYYV IDPGFAKLNV YNPKQGLDSL IITPISQASA KQRAGRAGRT GPGKCYRLYT ESAYRNEMPP TTTPEIQRIN LGETVLNMKA
0801: MGINDLLSFD FMDPPAPQSL ITAMEQLYNL GALDEEGLLT RVGRRMAEFP QEPPLSKMLL ASVDLGCSDE ILTIIAMIQT GNIFYRPREK QAQADRKRGN
0901: FFQPEGDHLT LLTVYQAWKA KQFSGPWCYE NFVQLTSLRR AQDVRKQLLE IMDKYKLNVV SAGNDLTKVR KAITAGFFFH AARKDPQGGY RTIADHQQVY
1001: IHPASALFQQ QPEWVIYHEV VMTTKEYMRE VTAIDPRWLV ELAPRFYRSA DPTKISKRKR QERIEPLYDR YNEPNSWRLS KRRG

Best Arabidopsis Sequence Match ( AT3G26560.1 )
(BLAST)

0001: MEKEELNKLN HLSLVSNVCN ELETHLGSAE KVLAEFIIDL GRHSETVDEF DKNLKEAGAE MPDYFVRSLL TTIHGIYPPK PKSEKKKEEG DDQKFKGLAI
0101: KDTKDKVKEL EKEIEREAEE RRREEDRNRD RDRRESGRDR DRDRNRDRDD RRDRHRDRER NRGDEEGEDR RSDRRHRERG RGDGGEGEDR RRDRRAKDEY
0201: VEEDKGGANE PELYQVYKGR VTRVMDAGCF VQFDKFRGKE GLVHVSQMAT RRVDKAKEFV KRDMEVYVKV ISISSDKYSL SMRDVDQNTG RDLIPLRKPS
0301: DEDDSSRSNP SYRTKDGQVT KTGISGIRIV EENDVAPSRR PLKKMSSPER WEAKQLIASG VLRVDEFPMY DEDGDGMLYQ EEGAEEELEI EMNEDEPAFL
0401: QGQTRYSVDM SPVKIFKNPE GSLSRAAALQ SALTKERREM REQQQRTMLD SIPKDLNRPW EDPMPETGER HLAQELRGVG LSAYDMPEWK KDAFGKTPTF
0501: GQRSKLSIQE QRESLPIYKL KKELIQAVHD NQVLVVIGET GSGKTTQVTQ YLAEAGYTTK GKIGCTQPRR VAAMSVAKRV AEEFGCRLGE EVGYAIRFED
0601: CTGPDTVIKY MTDGMLLREI LIDENLSQYS VIMLDEAHER TIHTDVLFGL LKKLMKRRLD LRLIVTSATL DAEKFSGYFF NCNIFTIPGR TFPVEILYTK
0701: QPETDYLDAA LITVLQIHLT EPEGDILVFL TGQEEIDSAC QSLYERMKGL GKNVPELIIL PVYSALPSEM QSRIFDPPPP GKRKVVVATN IAEASLTIDG
0801: IYYVVDPGFA KQNVYNPKQG LESLVITPIS QASAKQRAGR AGRTGPGKCY RLYTESAYRN EMPPTSIPEI QRINLGMTTL TMKAMGINDL LSFDFMDPPQ
0901: PQALISAMEQ LYSLGALDEE GLLTKLGRKM AEFPLEPPLS KMLLASVDLG CSDEILTMIA MIQTGNIFYR PREKQAQADQ KRAKFFQPEG DHLTLLAVYE
1001: AWKAKNFSGP WCFENFIQSR SLRRAQDVRK QLLSIMDKYK LDVVTAGKNF TKIRKAITAG FFFHGARKDP QEGYRTLVEN QPVYIHPSSA LFQRQPDWVI
1101: YHDLVMTTKE YMREVTVIDP KWLVELAPRF FKVSDPTKMS KRKRQERIEP LYDRYHEPNS WRLSKRRA

Arabidopsis Description

Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 [Source:UniProtKB/Swiss-Prot;Acc:Q38953]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.