Factsheet for GSMUA_Achr4P01520_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 2
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	87.64	87.64
Solyc01g086920.2.1	Tomato	nucleus	39.27	65.85
GSMUA_Achr3P03820_001	Banana	endoplasmic reticulum, extracellular	85.45	63.17
VIT_13s0064g01260.t01	Wine grape	extracellular	67.27	51.97
KRH43480	Soybean	nucleus	65.45	50.28
KRH23157	Soybean	nucleus	66.55	49.73
VIT_06s0004g01750.t01	Wine grape	extracellular	65.82	49.73
Os08t0505900-01	Rice	extracellular	68.36	49.47
PGSC0003DMT400017733	Potato	extracellular	64.73	48.37
PGSC0003DMT400003166	Potato	extracellular, vacuole	62.91	47.53
Zm00001d031434_P001	Maize	extracellular	65.82	47.51
TraesCS7A01G244600.1	Wheat	endoplasmic reticulum, extracellular, vacuole	65.09	47.11
TraesCS7B01G146800.1	Wheat	extracellular	65.09	47.11
TraesCS7D01G243300.1	Wheat	extracellular	65.09	47.11
Solyc11g056680.1.1	Tomato	extracellular	62.18	46.98
Bra035741.1-P	Field mustard	extracellular	62.18	46.85
CDY19601	Canola	extracellular	62.18	46.85
Bra038737.1-P	Field mustard	endoplasmic reticulum, extracellular	63.27	46.65
CDY50534	Canola	extracellular, vacuole	63.27	46.65
CDY52664	Canola	extracellular	63.27	46.65
HORVU7Hr1G050110.1	Barley	vacuole	65.45	46.39
AT3G20820.1	Thale cress	extracellular	61.45	46.3
CDY60388	Canola	extracellular	61.45	46.3
CDY27559	Canola	extracellular	61.45	46.3
AT3G12610.1	Thale cress	extracellular	62.55	46.24
HORVU7Hr1G050140.1	Barley	plastid	65.45	46.15
CDY06385	Canola	extracellular	61.09	46.03
Bra001460.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	62.18	45.97
CDX73812	Canola	endoplasmic reticulum, extracellular, vacuole	61.82	45.7
CDX85681	Canola	extracellular	57.09	45.51
CDY00787	Canola	endoplasmic reticulum, extracellular, vacuole	61.45	45.43
EES14271	Sorghum	cytosol	66.18	45.39
KRH20845	Soybean	endoplasmic reticulum	60.36	45.36
KRH27500	Soybean	endoplasmic reticulum, extracellular	59.64	44.93
Bra023383.1-P	Field mustard	extracellular	56.36	44.67
KRH24680	Soybean	extracellular	58.91	44.38
CDX91155	Canola	extracellular	54.91	43.64
AT5G12940.1	Thale cress	extracellular	58.18	43.13
Bra023925.1-P	Field mustard	extracellular	58.91	43.09
KRH29680	Soybean	endoplasmic reticulum	58.18	41.34
CDY68308	Canola	extracellular	56.0	41.18
Bra008869.1-P	Field mustard	extracellular, plasma membrane	56.0	41.18
KRH24681	Soybean	extracellular	53.09	41.13
CDY69775	Canola	extracellular, plasma membrane	56.0	40.85
CDY69275	Canola	extracellular	55.27	40.64
Bra008870.1-P	Field mustard	extracellular	54.91	40.48
CDY53975	Canola	extracellular	54.18	39.95
KRH12883	Soybean	cytosol	22.55	38.99
GSMUA_Achr1P06920_001	Banana	plastid	27.27	33.33
KRG91824	Soybean	extracellular	27.27	31.25
GSMUA_Achr9P12430_001	Banana	extracellular	29.82	27.15
GSMUA_Achr6P22250_001	Banana	extracellular	31.64	26.52
GSMUA_AchrUn_...	Banana	cytosol	27.27	22.59

Protein Annotations

EnsemblPlants:GSMUA_Achr4P01520_001	EnsemblPlants:GSMUA_Achr4T01520_001	EnsemblPlantsGene:GSMUA_Achr4G01520_001	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp
PANTHER:PTHR44401	PANTHER:PTHR44401:SF2	PFAM:PF13855	SMART:SM00369	SUPFAM:SSF52058	UniParc:UPI0002965228
UniProt:M0SK69	MapMan:35.1	:	:	:	:

Description

DNA-damage-repair/toleration protein DRT100 [Source:GMGC_GENE;Acc:GSMUA_Achr4G01520_001]

Coordinates

chr4:+:1260975..1262083

Molecular Weight (calculated)

29356.7 Da

IEP (calculated)

8.155

GRAVY (calculated)

0.120

Length

275 amino acids

Sequence
(BLAST)

001: MSGRISPEVC RLDRLATLIL ADWKHISGPI PPCLTSLPFL RILDLVGNRL TGTIPADIGR LSRLAVLNVA DNQISGHIPA SLPALSSLMH LDLSNNQISG
101: PIPHDFGNLR MLSRALLGRN RISGTIPASV GYMTRLADLD LAENRISGEI PATLGSMPVL SSLYLDSNRL TGQIPAALLR SRGLGILNLS RNGIEGEIPD
201: VFGSRSYYTA LDLSHNRLRG SVPKTLVTAA YVGHLDLSHN HLCGPIPAGS PFDHLEAASF TNNDCLCGGP LPVCK

Best Arabidopsis Sequence Match ( AT3G12610.1 )
(BLAST)

001: MRKLLASPFS SLLAVVFISV ISVVRCCSPK DQTALNAFKS SLSEPNLGIF NTWSENTDCC KEWYGISCDP DSGRVTDISL RGESEDAIFQ KAGRSGYMSG
101: SIDPAVCDLT ALTSLVLADW KGITGEIPPC ITSLASLRIL DLAGNKITGE IPAEIGKLSK LAVLNLAENQ MSGEIPASLT SLIELKHLEL TENGITGVIP
201: ADFGSLKMLS RVLLGRNELT GSIPESISGM ERLADLDLSK NHIEGPIPEW MGNMKVLSLL NLDCNSLTGP IPGSLLSNSG LDVANLSRNA LEGTIPDVFG
301: SKTYLVSLDL SHNSLSGRIP DSLSSAKFVG HLDISHNKLC GRIPTGFPFD HLEATSFSDN QCLCGGPLTT SC

Arabidopsis Description

DRT100DRT100 [Source:UniProtKB/TrEMBL;Acc:A0A178VMS3]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.