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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • extracellular 7
  • endoplasmic reticulum 5
  • vacuole 5
  • plasma membrane 5
  • golgi 5
  • plastid 2
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:plastid, secretory
BaCelLo:secretory
ChloroP:plastid
iPSORT:secretory
MultiLoc:extracellular
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY50534 Canola extracellular, vacuole 97.86 97.86
CDY00787 Canola endoplasmic reticulum, extracellular, vacuole 89.28 89.52
CDX73812 Canola endoplasmic reticulum, extracellular, vacuole 88.47 88.71
AT3G12610.1 Thale cress extracellular 88.2 88.44
Solyc01g086920.2.1 Tomato nucleus 28.95 65.85
GSMUA_Achr4P01520_001 Banana cytosol 46.65 63.27
VIT_13s0064g01260.t01 Wine grape extracellular 60.32 63.2
GSMUA_Achr10P... Banana cytosol 45.84 62.18
KRH43480 Soybean nucleus 59.52 62.01
KRH20845 Soybean endoplasmic reticulum 59.25 60.38
KRH27500 Soybean endoplasmic reticulum, extracellular 57.91 59.18
PGSC0003DMT400017733 Potato extracellular 58.18 58.97
CDY60388 Canola extracellular 56.84 58.08
CDY27559 Canola extracellular 56.84 58.08
CDY19601 Canola extracellular 56.57 57.81
CDY06385 Canola extracellular 56.3 57.53
GSMUA_Achr3P03820_001 Banana endoplasmic reticulum, extracellular 56.03 56.18
Os08t0505900-01 Rice extracellular 57.1 56.05
CDY69775 Canola extracellular, plasma membrane 54.69 54.11
CDX85681 Canola extracellular 49.87 53.91
CDY68308 Canola extracellular 53.89 53.74
CDX91155 Canola extracellular 49.6 53.47
KRH12883 Soybean cytosol 22.79 53.46
Zm00001d031434_P001 Maize extracellular 54.42 53.28
TraesCS7B01G146800.1 Wheat extracellular 53.89 52.89
CDY53975 Canola extracellular 52.55 52.55
EES14271 Sorghum cytosol 56.03 52.12
TraesCS7D01G243300.1 Wheat extracellular 53.08 52.11
TraesCS7A01G244600.1 Wheat endoplasmic reticulum, extracellular, vacuole 53.08 52.11
CDY69275 Canola extracellular 52.01 51.87
HORVU7Hr1G050110.1 Barley vacuole 53.35 51.29
HORVU7Hr1G050140.1 Barley plastid 53.35 51.03
KRG91824 Soybean extracellular 32.17 50.0
CDY08451 Canola endoplasmic reticulum, extracellular 29.22 33.44
CDY05006 Canola extracellular 28.95 33.33
CDY42127 Canola extracellular 28.95 33.13
CDX70057 Canola extracellular 29.76 33.04
CDY52623 Canola extracellular, vacuole 28.69 32.92
CDY14065 Canola extracellular 28.42 32.72
CDX98965 Canola extracellular 28.95 32.53
CDX70058 Canola extracellular 28.95 32.34
CDY58884 Canola extracellular 28.69 32.33
CDX70060 Canola extracellular 28.69 32.23
CDX98967 Canola extracellular 28.95 32.14
CDX70059 Canola extracellular 28.69 32.04
CDY50569 Canola extracellular, vacuole 27.88 32.0
CDY42131 Canola extracellular 27.61 31.89
CDY58888 Canola extracellular 29.22 31.87
CDY58887 Canola extracellular 28.15 31.82
CDX98966 Canola extracellular 28.42 31.74
CDY42130 Canola extracellular 27.61 31.5
CDY08448 Canola extracellular 27.35 31.19
CDX81023 Canola extracellular 28.42 30.99
CDY08450 Canola extracellular 26.81 30.96
CDY58889 Canola extracellular 27.61 29.68
CDY42129 Canola cytosol 25.74 29.63
CDX98968 Canola endoplasmic reticulum, extracellular, vacuole 28.69 27.79
CDX70056 Canola extracellular 27.88 25.68
CDX93759 Canola endoplasmic reticulum, extracellular, vacuole 10.72 24.54
CDY15279 Canola plastid 27.88 24.41
CDY40923 Canola extracellular, vacuole 30.56 24.31
CDY64876 Canola extracellular, vacuole 37.27 23.84
CDX88024 Canola extracellular, vacuole 37.0 23.51
CDX80361 Canola extracellular, vacuole 36.73 23.34
CDY16850 Canola plastid 29.49 22.22
CDY38783 Canola extracellular 24.4 22.2
CDY11623 Canola extracellular 23.86 21.29
CDX93758 Canola plastid 13.4 19.46
CDX81022 Canola extracellular, plasma membrane 24.93 18.38
Protein Annotations
EnsemblPlants:CDY52664EnsemblPlantsGene:GSBRNA2T00007555001Gene3D:3.80.10.10GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:IPR001611InterPro:IPR032675InterPro:LRR_N_plant-typInterPro:LRR_dom_sfInterPro:Leu-rich_rptPANTHER:PTHR44401
PFAM:PF08263PFAM:PF13855ProteinID:CDY52664ProteinID:CDY52664.1SEG:segSignalP:SignalP-noTM
SUPFAM:SSF52058UniParc:UPI0004EE3A0BUniProt:A0A078ITB0MapMan:35.1::
Description
BnaC01g38540DBnaC01g38540D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ITB0]
Coordinates
chrLK033115:-:21121..22242
Molecular Weight (calculated)
39488.2 Da
IEP (calculated)
4.536
GRAVY (calculated)
0.072
Length
373 amino acids
Sequence
(BLAST)
001: MTKLLASPLS SLLLAVAFIS VITVVRSCSP TDQTALNAFK SSLSEPNLGI FNTWSENTDC CKGWYGISCD PDTGRVTDIS LRGESEDAIF QKAGRSGYMS
101: GSIDPAVCDL TALTSFVLAD WKGISGEIPP CITSLASLRI LDLAGNRITG EIPTDIGKLT KLGVLNLAEN RMSGEIPSSL TSLSELKHLE LTENGISGQI
201: PADFGSLKML SRALLGRNEL TGSLPESISG MDRLADLDLS RNHIEGPIPE WVGNMKVLSL LNLDCNSLTG TIPGSLLSNS GYGVLNLSRN ALEGSIPDVF
301: GSTTYFVALD LSHNNLAGRI PDSLTSAKFV GHLDISNNKL CGPIPTGSPF DHLEATSFSD NECLCGGPLM KTC
Best Arabidopsis Sequence Match ( AT3G12610.1 )
(BLAST)
001: MRKLLASPFS SLLAVVFISV ISVVRCCSPK DQTALNAFKS SLSEPNLGIF NTWSENTDCC KEWYGISCDP DSGRVTDISL RGESEDAIFQ KAGRSGYMSG
101: SIDPAVCDLT ALTSLVLADW KGITGEIPPC ITSLASLRIL DLAGNKITGE IPAEIGKLSK LAVLNLAENQ MSGEIPASLT SLIELKHLEL TENGITGVIP
201: ADFGSLKMLS RVLLGRNELT GSIPESISGM ERLADLDLSK NHIEGPIPEW MGNMKVLSLL NLDCNSLTGP IPGSLLSNSG LDVANLSRNA LEGTIPDVFG
301: SKTYLVSLDL SHNSLSGRIP DSLSSAKFVG HLDISHNKLC GRIPTGFPFD HLEATSFSDN QCLCGGPLTT SC
Arabidopsis Description
DRT100DRT100 [Source:UniProtKB/TrEMBL;Acc:A0A178VMS3]
SUBAcon: [extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.