CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034773.1-P	Field mustard	cytosol	89.78	92.06
CDY08448	Canola	extracellular	87.93	86.85
CDY42130	Canola	extracellular	87.93	86.85
CDY08450	Canola	extracellular	84.83	84.83
CDY42129	Canola	cytosol	80.5	80.25
CDY42127	Canola	extracellular	70.59	69.94
CDY08451	Canola	endoplasmic reticulum, extracellular	69.04	68.4
CDY52623	Canola	extracellular, vacuole	68.11	67.69
CDY50569	Canola	extracellular, vacuole	68.11	67.69
CDY05006	Canola	extracellular	57.28	57.1
CDY14065	Canola	extracellular	55.42	55.25
CDX70058	Canola	extracellular	49.54	47.9
CDX98965	Canola	extracellular	49.23	47.89
CDY58884	Canola	extracellular	48.61	47.43
CDX70059	Canola	extracellular	48.92	47.31
CDY58887	Canola	extracellular	47.99	46.97
CDX98966	Canola	extracellular	48.3	46.71
CDX70060	Canola	extracellular	47.99	46.69
CDY58888	Canola	extracellular	49.23	46.49
CDX70057	Canola	extracellular	47.99	46.13
CDX98967	Canola	extracellular	47.99	46.13
CDX81023	Canola	extracellular	48.3	45.61
CDY58889	Canola	extracellular	47.68	44.38
CDX98968	Canola	endoplasmic reticulum, extracellular, vacuole	49.54	41.56
CDX70056	Canola	extracellular	49.54	39.51
CDX85681	Canola	extracellular	31.27	29.28
CDX91155	Canola	extracellular	31.27	29.19
CDX73812	Canola	endoplasmic reticulum, extracellular, vacuole	32.2	27.96
CDY00787	Canola	endoplasmic reticulum, extracellular, vacuole	31.89	27.69
CDY52664	Canola	extracellular	31.89	27.61
CDY60388	Canola	extracellular	30.96	27.4
CDY53975	Canola	extracellular	31.27	27.08
CDY50534	Canola	extracellular, vacuole	31.27	27.08
CDX81022	Canola	extracellular, plasma membrane	42.11	26.88
CDY68308	Canola	extracellular	30.96	26.74
CDY06385	Canola	extracellular	30.03	26.58
CDY19601	Canola	extracellular	30.03	26.58
CDY27559	Canola	extracellular	29.72	26.3
CDY69775	Canola	extracellular, plasma membrane	30.65	26.26
CDY69275	Canola	extracellular	30.34	26.2
CDX93759	Canola	endoplasmic reticulum, extracellular, vacuole	10.84	21.47
CDY15279	Canola	plastid	27.86	21.13
CDY38783	Canola	extracellular	26.32	20.73
CDY40923	Canola	extracellular, vacuole	30.03	20.68
CDY11623	Canola	extracellular	26.32	20.33
CDX88024	Canola	extracellular, vacuole	34.06	18.74
CDX80361	Canola	extracellular, vacuole	33.75	18.57
CDY64876	Canola	extracellular, vacuole	33.44	18.52
CDX93758	Canola	plastid	14.55	18.29
CDY16850	Canola	plastid	26.01	16.97

Protein Annotations

EnsemblPlants:CDY42131	EnsemblPlantsGene:GSBRNA2T00074311001	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	PANTHER:PTHR44138
PFAM:PF00560	PFAM:PF08263	PFscan:PS51257	ProteinID:CDY42131	ProteinID:CDY42131.1	SignalP:SignalP-noTM
SUPFAM:SSF52058	UniParc:UPI0004EF3F02	UniProt:A0A078HWL9	MapMan:26.8.3.4	:	:

Description

BnaC05g40880DBnaC05g40880D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HWL9]

Coordinates

chrLK032516:-:51709..53060

Molecular Weight (calculated)

36317.2 Da

IEP (calculated)

9.403

GRAVY (calculated)

-0.190

Length

323 amino acids

Sequence
(BLAST)

001: MKLLLCLSML FISSLPSSYS CNSKDENTLL QIKKHFNNPD LLSTWNPATD CCTSWTGIEC TNGRVTLLSM SKDNNLVGHI PDQIGDLLEL QSLEMSYMNL
101: TGNIPRTITK LKHLDFIFLK WNRLSGPIPD YISELKNVTF MDLSYNKFTG PVPGWLTQMP KLQTFQIDNN SLTGPIPNSF GSFVGNVPNV FLPYNKLSGK
201: IPESLSKIDF QAIVLKGNGF TGDGSMFFGG NKRTVQLDLS RNLFEFDLSK VKFGKSMALL DLSHNRIFGK LPRELTELPL QRFNISYNRL CGKIPRGGKL
301: QTFKSYEFAH NRCLCGSPLK KAC

Best Arabidopsis Sequence Match ( AT3G12145.1 )
(BLAST)

001: MKLFVHLSIF FSILFITLPS SYSCTENDKN ALLQIKKALG NPPLLSSWNP RTDCCTGWTG VECTNRRVTG LSVTSGEVSG QISYQIGDLV DLRTLDFSYL
101: PHLTGNIPRT ITKLKNLNTL YLKHTSLSGP IPDYISELKS LTFLDLSFNQ FTGPIPGSLS QMPKLEAIQI NDNKLTGSIP NSFGSFVGNV PNLYLSNNKL
201: SGKIPESLSK YDFNAVDLSG NGFEGDAFMF FGRNKTTVRV DLSRNMFNFD LVKVKFARSI VSLDLSQNHI YGKIPPALTK LHLEHFNVSD NHLCGKIPSG
301: GLLQTFEPSA FAHNICLCGT PLKAC

Arabidopsis Description

FLR1FTM4 [Source:UniProtKB/TrEMBL;Acc:A0A178V9V7]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.