Subcellular Localization
min:
: max
Winner_takes_all: extracellular, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 5
- golgi 5
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY50569 | Canola | extracellular, vacuole | 97.85 | 97.85 |
| AT3G12145.1 | Thale cress | extracellular | 82.46 | 82.46 |
| CDY08451 | Canola | endoplasmic reticulum, extracellular | 73.85 | 73.62 |
| CDY42127 | Canola | extracellular | 73.85 | 73.62 |
| CDY42130 | Canola | extracellular | 69.54 | 69.11 |
| CDY42131 | Canola | extracellular | 67.69 | 68.11 |
| CDY08450 | Canola | extracellular | 67.69 | 68.11 |
| CDY08448 | Canola | extracellular | 68.0 | 67.58 |
| CDY42129 | Canola | cytosol | 63.69 | 63.89 |
| CDY05006 | Canola | extracellular | 63.08 | 63.27 |
| CDY14065 | Canola | extracellular | 60.92 | 61.11 |
| CDX98965 | Canola | extracellular | 54.77 | 53.61 |
| CDX70059 | Canola | extracellular | 54.15 | 52.69 |
| CDX70060 | Canola | extracellular | 53.54 | 52.41 |
| CDY58884 | Canola | extracellular | 53.23 | 52.27 |
| CDX98966 | Canola | extracellular | 53.54 | 52.1 |
| CDX70058 | Canola | extracellular | 53.54 | 52.1 |
| CDY58887 | Canola | extracellular | 52.0 | 51.21 |
| CDX70057 | Canola | extracellular | 52.0 | 50.3 |
| CDX98967 | Canola | extracellular | 51.69 | 50.0 |
| CDY58888 | Canola | extracellular | 51.69 | 49.12 |
| CDX81023 | Canola | extracellular | 50.77 | 48.25 |
| CDY58889 | Canola | extracellular | 50.77 | 47.55 |
| CDX98968 | Canola | endoplasmic reticulum, extracellular, vacuole | 52.92 | 44.68 |
| CDX70056 | Canola | extracellular | 52.62 | 42.22 |
| CDX81022 | Canola | extracellular, plasma membrane | 45.23 | 29.05 |
| CDY60388 | Canola | extracellular | 32.62 | 29.04 |
| CDX85681 | Canola | extracellular | 30.77 | 28.99 |
| CDY06385 | Canola | extracellular | 32.31 | 28.77 |
| CDY19601 | Canola | extracellular | 32.31 | 28.77 |
| CDY52664 | Canola | extracellular | 32.92 | 28.69 |
| CDX91155 | Canola | extracellular | 30.46 | 28.61 |
| CDY00787 | Canola | endoplasmic reticulum, extracellular, vacuole | 32.62 | 28.49 |
| CDX73812 | Canola | endoplasmic reticulum, extracellular, vacuole | 32.62 | 28.49 |
| CDY27559 | Canola | extracellular | 31.69 | 28.22 |
| CDY50534 | Canola | extracellular, vacuole | 32.31 | 28.15 |
| CDY69775 | Canola | extracellular, plasma membrane | 30.46 | 26.26 |
| CDY53975 | Canola | extracellular | 29.85 | 26.01 |
| CDY68308 | Canola | extracellular | 29.85 | 25.94 |
| CDY69275 | Canola | extracellular | 28.92 | 25.13 |
| CDY15279 | Canola | plastid | 28.31 | 21.6 |
| CDY38783 | Canola | extracellular | 26.77 | 21.22 |
| CDY40923 | Canola | extracellular, vacuole | 30.15 | 20.9 |
| CDY11623 | Canola | extracellular | 26.15 | 20.33 |
| CDX93759 | Canola | endoplasmic reticulum, extracellular, vacuole | 10.15 | 20.25 |
| CDX93758 | Canola | plastid | 15.38 | 19.46 |
| CDX88024 | Canola | extracellular, vacuole | 33.54 | 18.57 |
| CDX80361 | Canola | extracellular, vacuole | 33.23 | 18.4 |
| CDY64876 | Canola | extracellular, vacuole | 32.62 | 18.18 |
| CDY16850 | Canola | plastid | 25.54 | 16.77 |
Protein Annotations
| EnsemblPlants:CDY52623 | EnsemblPlantsGene:GSBRNA2T00007408001 | Gene3D:3.80.10.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR001611 | InterPro:IPR032675 | InterPro:LRR_N_plant-typ | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt | PANTHER:PTHR44138 |
| PFAM:PF08263 | PFAM:PF13516 | ProteinID:CDY52623 | ProteinID:CDY52623.1 | SEG:seg | SignalP:SignalP-noTM |
| SUPFAM:SSF52058 | UniParc:UPI0004EE85C6 | UniProt:A0A078IUD4 | MapMan:26.8.3.4 | : | : |
Description
BnaCnng23020DBnaCnng23020D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IUD4]
Coordinates
chrLK033108:+:78762..80266
Molecular Weight (calculated)
35868.3 Da
IEP (calculated)
9.205
GRAVY (calculated)
-0.027
Length
325 amino acids
Sequence
(BLAST)
(BLAST)
001: MKLLLHLSIF FTILFISLPS SHSSSSNDKN ALLQIKKALN NPPLLSSWNP QTDFCTTWTG VECTNGRVTA LTISSGEISG QIPAQVGDLL ELRTLDFSYL
101: THLTGNIPHT ITKLKYLDLL RLKQTNLSGY IPDFISELKS VTFLDLSFNQ FTGPIPGSLS QMPKLGALQI NDNKLTGSIP NSFGSFVGTV PNLYLFNNKL
201: SGKVPESLSK YDFNAVDLSG NSFIGDGSMF FGRNKTTIRL DLSRNMFEFD LSKVKFARSI VSLDLSHNKI SGKFPRELTK LRLEHFNVSY NHLCGKIPSG
301: GLLQTFEPSA FSHNLCLCGT PLKAC
101: THLTGNIPHT ITKLKYLDLL RLKQTNLSGY IPDFISELKS VTFLDLSFNQ FTGPIPGSLS QMPKLGALQI NDNKLTGSIP NSFGSFVGTV PNLYLFNNKL
201: SGKVPESLSK YDFNAVDLSG NSFIGDGSMF FGRNKTTIRL DLSRNMFEFD LSKVKFARSI VSLDLSHNKI SGKFPRELTK LRLEHFNVSY NHLCGKIPSG
301: GLLQTFEPSA FSHNLCLCGT PLKAC
001: MKLFVHLSIF FSILFITLPS SYSCTENDKN ALLQIKKALG NPPLLSSWNP RTDCCTGWTG VECTNRRVTG LSVTSGEVSG QISYQIGDLV DLRTLDFSYL
101: PHLTGNIPRT ITKLKNLNTL YLKHTSLSGP IPDYISELKS LTFLDLSFNQ FTGPIPGSLS QMPKLEAIQI NDNKLTGSIP NSFGSFVGNV PNLYLSNNKL
201: SGKIPESLSK YDFNAVDLSG NGFEGDAFMF FGRNKTTVRV DLSRNMFNFD LVKVKFARSI VSLDLSQNHI YGKIPPALTK LHLEHFNVSD NHLCGKIPSG
301: GLLQTFEPSA FAHNICLCGT PLKAC
101: PHLTGNIPRT ITKLKNLNTL YLKHTSLSGP IPDYISELKS LTFLDLSFNQ FTGPIPGSLS QMPKLEAIQI NDNKLTGSIP NSFGSFVGNV PNLYLSNNKL
201: SGKIPESLSK YDFNAVDLSG NGFEGDAFMF FGRNKTTVRV DLSRNMFNFD LVKVKFARSI VSLDLSQNHI YGKIPPALTK LHLEHFNVSD NHLCGKIPSG
301: GLLQTFEPSA FAHNICLCGT PLKAC
Arabidopsis Description
FLR1FTM4 [Source:UniProtKB/TrEMBL;Acc:A0A178V9V7]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.