CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38783	Canola	extracellular	93.06	94.88
Bra016239.1-P	Field mustard	cytosol	58.13	94.19
CDX93758	Canola	plastid	40.19	65.37
CDX93759	Canola	endoplasmic reticulum, extracellular, vacuole	25.36	65.03
CDY40923	Canola	extracellular, vacuole	64.83	57.78
CDY15279	Canola	plastid	55.98	54.93
AT1G33670.1	Thale cress	extracellular	59.57	54.73
PGSC0003DMT400043544	Potato	extracellular	51.2	44.77
KRH56366	Soybean	nucleus	51.2	43.76
Solyc10g052880.1.1	Tomato	extracellular	49.76	43.51
CDY42127	Canola	extracellular	20.57	26.38
CDY42131	Canola	extracellular	20.33	26.32
CDY52623	Canola	extracellular, vacuole	20.33	26.15
CDY50569	Canola	extracellular, vacuole	20.33	26.15
CDY08451	Canola	endoplasmic reticulum, extracellular	20.33	26.07
CDY42130	Canola	extracellular	20.33	25.99
CDY08450	Canola	extracellular	19.86	25.7
CDY08448	Canola	extracellular	20.1	25.69
CDX91155	Canola	extracellular	21.05	25.43
CDY42129	Canola	cytosol	19.62	25.31
CDX85681	Canola	extracellular	20.81	25.22
CDY60388	Canola	extracellular	22.01	25.21
CDY53975	Canola	extracellular	22.49	25.2
CDX70060	Canola	extracellular	19.86	25.0
CDX98965	Canola	extracellular	19.62	24.7
CDY19601	Canola	extracellular	21.53	24.66
CDY27559	Canola	extracellular	21.53	24.66
CDX70058	Canola	extracellular	19.62	24.55
CDY58887	Canola	extracellular	19.38	24.55
CDY58884	Canola	extracellular	19.38	24.47
CDY06385	Canola	extracellular	21.29	24.38
CDY05006	Canola	extracellular	18.9	24.38
CDY14065	Canola	extracellular	18.9	24.38
CDY69275	Canola	extracellular	21.77	24.33
CDY58888	Canola	extracellular	19.86	24.27
CDY64876	Canola	extracellular, vacuole	33.73	24.19
CDY50534	Canola	extracellular, vacuole	21.53	24.13
CDX70057	Canola	extracellular	19.38	24.11
CDX98967	Canola	extracellular	19.38	24.11
CDX98966	Canola	extracellular	19.14	23.95
CDY69775	Canola	extracellular, plasma membrane	21.53	23.87
CDY52664	Canola	extracellular	21.29	23.86
CDY68308	Canola	extracellular	21.29	23.8
CDX80361	Canola	extracellular, vacuole	33.25	23.68
CDX70059	Canola	extracellular	18.9	23.65
CDX88024	Canola	extracellular, vacuole	33.01	23.51
CDX81023	Canola	extracellular	19.14	23.39
CDX73812	Canola	endoplasmic reticulum, extracellular, vacuole	20.81	23.39
CDY00787	Canola	endoplasmic reticulum, extracellular, vacuole	20.81	23.39
CDY58889	Canola	extracellular	19.14	23.05
CDY16850	Canola	plastid	27.27	23.03
VIT_18s0089g00010.t01	Wine grape	plasma membrane	50.72	22.2
CDX98968	Canola	endoplasmic reticulum, extracellular, vacuole	20.33	22.08
CDX70056	Canola	extracellular	20.57	21.23
CDX81022	Canola	extracellular, plasma membrane	16.99	14.03

Protein Annotations

EnsemblPlants:CDY11623	EnsemblPlantsGene:GSBRNA2T00049746001	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	PANTHER:PTHR45271
PFAM:PF08263	PFAM:PF13855	ProteinID:CDY11623	ProteinID:CDY11623.1	SEG:seg	SignalP:SignalP-noTM
SUPFAM:SSF52058	UniParc:UPI0004EF236A	UniProt:A0A078FHS3	MapMan:35.1	:	:

Description

BnaC06g31160DBnaC06g31160D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FHS3]

Coordinates

chrLK032012:+:539572..545803

Molecular Weight (calculated)

45716.7 Da

IEP (calculated)

8.988

GRAVY (calculated)

0.113

Length

418 amino acids

Sequence
(BLAST)

001: MNSSYLFTSF IFAAVISLGC CLRSTGAATC HPDDEAGLLS FEAGITEDPL GILSSWKKGS DCCSWFGVIC ITGDRVTELR MLGSSVLGVG FLSGTISPSL
101: AKLEHLKTLS FTPFSFQHTH LLNITGPFPE FLFRLPKLRY VTIRDNHLSG PLPVNIGSLS ELELRLIDLS RNGLYGKLPP SMGSLAQTLT SLYLSQNNLS
201: GTIPDYFSEF KALATFDLSR NRFTGVVPMS FAKLKSLFHL KLSHNLLTGP LPDLNPLNGI ASLDLSYNKF HLKTIPQWVT SSPSMYDLKL VKCGIKMNIE
301: EWEPVRTGLF YIVDLSKNDI SGSPARFLNQ AGVLQEFQAS GNKLRFDLGK LNFTKSLRIL DLSRNLVYGK VPASVAGLRK LSLSQNNLCG KLPVTKFPAS
401: VFAGNDCLCG SPLPPCKT

Best Arabidopsis Sequence Match ( AT1G33590.2 )
(BLAST)

001: MQMDWSKTST LTSQLSSNLF PTTNSSLLSI NTTQFTTMNS SFTLFIFTFV IFLQCLNPTG AATCHPDDEA GLLAFKAGIT RDPSGILSSW KKGTACCSWN
101: GVTCLTTDRV SALSVAGQAD VAGSFLSGTL SPSLAKLKHL DGIYFTDLKN ITGSFPQFLF QLPNLKYVYI ENNRLSGTLP ANIGALSQLE AFSLEGNRFT
201: GPIPSSISNL TLLTQLKLGN NLLTGTIPLG VANLKLMSYL NLGGNRLTGT IPDIFKSMPE LRSLTLSRNG FSGNLPPSIA SLAPILRFLE LGHNKLSGTI
301: PNFLSNFKAL DTLDLSKNRF SGVIPKSFAN LTKIFNLDLS HNLLTDPFPV LNVKGIESLD LSYNQFHLNT IPKWVTSSPI IFSLKLAKCG IKMSLDDWKP
401: AQTFYYDFID LSENEITGSP ARFLNQTEYL VEFKAAGNKL RFDMGKLTFA KTLTTLDISR NLVFGKVPAM VAGLKTLNVS HNHLCGKLPV TKFPASAFVG
501: NDCLCGSPLS PCKA

Arabidopsis Description

Leucine-rich repeat (LRR) family protein [Source:TAIR;Acc:AT1G33590]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.