Factsheet for VIT_18s0089g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 7
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93758	Canola	plastid	18.74	69.65
PGSC0003DMT400043544	Potato	extracellular	33.93	67.78
Solyc10g052880.1.1	Tomato	extracellular	33.61	67.15
Bra028006.1-P	Field mustard	endoplasmic reticulum, vacuole	33.19	66.18
CDY40923	Canola	extracellular, vacuole	32.25	65.67
KRH56366	Soybean	nucleus	33.4	65.24
CDY15279	Canola	plastid	28.48	63.85
AT1G33590.2	Thale cress	plastid	34.24	63.62
AT2G26380.1	Thale cress	endoplasmic reticulum, extracellular	29.42	58.54
AT1G33600.1	Thale cress	extracellular	29.21	58.37
CDX93759	Canola	endoplasmic reticulum, extracellular, vacuole	9.95	58.28
AT1G33670.1	Thale cress	extracellular	27.23	57.14
AT1G33610.1	Thale cress	extracellular, plasma membrane, vacuole	28.17	56.28
AT1G33612.1	Thale cress	extracellular	26.81	56.26
Bra010209.1-P	Field mustard	extracellular	27.54	55.02
Bra016239.1-P	Field mustard	cytosol	14.66	54.26
CDY38783	Canola	extracellular	22.72	52.93
CDY11623	Canola	extracellular	22.2	50.72
VIT_06s0004g01750.t01	Wine grape	extracellular	13.19	34.62
VIT_13s0064g01370.t01	Wine grape	extracellular	11.31	32.53
VIT_08s0007g07690.t01	Wine grape	extracellular	11.2	31.1
VIT_13s0064g01260.t01	Wine grape	extracellular	11.41	30.62
VIT_10s0071g00860.t01	Wine grape	extracellular, vacuole	18.22	29.44
VIT_04s0023g02870.t01	Wine grape	extracellular	17.59	26.13
VIT_01s0026g01200.t01	Wine grape	extracellular, plasma membrane	16.75	24.96

Protein Annotations

EntrezGene:100261979	wikigene:100261979	Gene3D:3.80.10.10	MapMan:35.1	EMBL:AM457982	ProteinID:CAN59939
ProteinID:CAN59939.1	ProteinID:CAN59940	ProteinID:CAN59940.1	ProteinID:CCB44166	ProteinID:CCB44166.1	ncoils:Coil
UniProt:F6GW31	EMBL:FN594956	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611
InterPro:IPR032675	EntrezGene:LOC100261979	wikigene:LOC100261979	InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt
InterPro:Leu-rich_rpt_typical-subtyp	PFAM:PF00560	PFAM:PF08263	PFAM:PF13855	SMART:SM00369	SUPFAM:SSF52058
SignalP:SignalP-noTM	UniParc:UPI0002109A10	ArrayExpress:VIT_18s0089g00010	EnsemblPlantsGene:VIT_18s0089g00010	EnsemblPlants:VIT_18s0089g00010.t01	RefSeq:XP_003634629
RefSeq:XP_003634629.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr18:-:27668094..27672912

Molecular Weight (calculated)

105407.0 Da

IEP (calculated)

9.523

GRAVY (calculated)

0.007

Length

955 amino acids

Sequence
(BLAST)

001: MMKALKASLF LLALRCLTVA SAAWHVDDES GLLAFKSAIT HDPSGMLQDW KPGTDCCKWS GMDCLGENRV MTLSLTGQPG ERDSFLFGTI SPSLGKVQNL
101: VGIYLLNLRN ISGPFRIFFF RMSKPQYVYI EYNRLSGLIP RNIGNLARFS AMSLEGNRFT GPIPSSISQL TGLTQLNFGG NMLTGPIPAG ISRLKNLSLL
201: SVDRNQLSAG IPDFFSSFTD LRVLRLSHNK FSGKIPKSIS SLAPNLAYLE LGHNSLAGQV PDFLGNFTAL DTLDLSWNQF SGIVPKTFSK LTKIFNLDLS
301: HNSLVDPFPE MFYNHFHLGA IPKWVTSSEI IYSPKLAKCG LKFKLDDWKP LETYFYDYID LSENKIIGSP IRLLNKTDYL VGFWTPGNQL RFNMSKSRIV
401: KTLNYIDMSR NMVFGKVPEA ISGLEKLNVS HNHLCARIPP SKFPASAFQG NDCLVRKLIP FSTSTLQATA TAMLALKSSL FFLLLSLLSL LTLQCLTAAS
501: AACHVDDELG LLAFKSAITH DPSGMLQNWK SGTDCCKWPG ITCLSGNRVT SLSLTGQPGK QNSFLSGTIS PSLVKVQNLD GIYLQNLRNI TGPFPALLFG
601: MPKLLFVYIE NNQLSGPLRR DIGNLTQLNA LSFEGNRFSG PIPSSISQLT GLTQLKLGGN LLTGTVPAGI SRLKDLTFLS LERNGLSGSI PDFFSSFSNL
701: RILRLSHNKF SGKIPNSISS LSPKLAYLEV GHNSLVGQIP DFLGNFTALD TLDLSWNQFS GTVPKTFAKL TKIFNLDLSH NFLVDPFPEM SVKGIESLDL
801: SYNHFHLGTI PKWVTSSEII YSLKLAKCGL KFKLDDWKPS ETYFYDYIDL SENEITGSPT QLLNKTDYLV GFWASGNQLR FDFSKLRIVK TLKYLDVSRS
901: MVFGKVPEGI TGLEKLNVSH NHLCGRLPPS KFPASAFQGN DCLCGSPLSA CKRSK

Best Arabidopsis Sequence Match ( AT1G33590.2 )
(BLAST)

001: MQMDWSKTST LTSQLSSNLF PTTNSSLLSI NTTQFTTMNS SFTLFIFTFV IFLQCLNPTG AATCHPDDEA GLLAFKAGIT RDPSGILSSW KKGTACCSWN
101: GVTCLTTDRV SALSVAGQAD VAGSFLSGTL SPSLAKLKHL DGIYFTDLKN ITGSFPQFLF QLPNLKYVYI ENNRLSGTLP ANIGALSQLE AFSLEGNRFT
201: GPIPSSISNL TLLTQLKLGN NLLTGTIPLG VANLKLMSYL NLGGNRLTGT IPDIFKSMPE LRSLTLSRNG FSGNLPPSIA SLAPILRFLE LGHNKLSGTI
301: PNFLSNFKAL DTLDLSKNRF SGVIPKSFAN LTKIFNLDLS HNLLTDPFPV LNVKGIESLD LSYNQFHLNT IPKWVTSSPI IFSLKLAKCG IKMSLDDWKP
401: AQTFYYDFID LSENEITGSP ARFLNQTEYL VEFKAAGNKL RFDMGKLTFA KTLTTLDISR NLVFGKVPAM VAGLKTLNVS HNHLCGKLPV TKFPASAFVG
501: NDCLCGSPLS PCKA

Arabidopsis Description

Leucine-rich repeat (LRR) family protein [Source:TAIR;Acc:AT1G33590]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.