Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 8
- vacuole 4
- plasma membrane 4
- peroxisome 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G26380.1 | Thale cress | endoplasmic reticulum, extracellular | 68.83 | 68.54 |
| AT1G33590.2 | Thale cress | plastid | 73.43 | 68.29 |
| AT1G33612.1 | Thale cress | extracellular | 62.13 | 65.27 |
| AT1G33610.1 | Thale cress | extracellular, plasma membrane, vacuole | 64.85 | 64.85 |
| AT1G33670.1 | Thale cress | extracellular | 61.3 | 64.4 |
| PGSC0003DMT400043544 | Potato | extracellular | 56.49 | 56.49 |
| KRH56366 | Soybean | nucleus | 56.49 | 55.21 |
| Solyc10g052880.1.1 | Tomato | extracellular | 54.81 | 54.81 |
| AT3G12145.1 | Thale cress | extracellular | 25.1 | 36.92 |
| AT5G12940.1 | Thale cress | extracellular | 26.99 | 34.77 |
| AT5G06860.1 | Thale cress | extracellular | 23.85 | 34.55 |
| AT5G06870.1 | Thale cress | extracellular | 23.64 | 34.24 |
| AT3G20820.1 | Thale cress | extracellular | 25.94 | 33.97 |
| AT3G12610.1 | Thale cress | extracellular | 25.31 | 32.53 |
| VIT_18s0089g00010.t01 | Wine grape | plasma membrane | 58.37 | 29.21 |
| AT5G23400.1 | Thale cress | vacuole | 35.36 | 28.69 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:840254 | ProteinID:AAG26081.1 | ProteinID:AEE31607.1 | ProteinID:ANM58975.1 |
| ArrayExpress:AT1G33600 | EnsemblPlantsGene:AT1G33600 | RefSeq:AT1G33600 | TAIR:AT1G33600 | RefSeq:AT1G33600-TAIR-G | EnsemblPlants:AT1G33600.1 |
| TAIR:AT1G33600.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005618 |
| GO:GO:0005623 | GO:GO:0009505 | GO:GO:0016020 | GO:GO:0030312 | InterPro:IPR001611 | InterPro:IPR032675 |
| InterPro:LRR_N_plant-typ | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt | InterPro:Leu-rich_rpt_typical-subtyp | RefSeq:NP_001321374.1 | RefSeq:NP_174624.1 |
| PFAM:PF00560 | PFAM:PF08263 | PFAM:PF13855 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0005417 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR00019 | PANTHER:PTHR45271 | UniProt:Q9FW48 |
| SMART:SM00369 | SUPFAM:SSF52047 | SignalP:SignalP-noTM | UniParc:UPI00000A8136 | SEG:seg | : |
Description
Leucine-rich repeat (LRR) family protein [Source:UniProtKB/TrEMBL;Acc:Q9FW48]
Coordinates
chr1:+:12180483..12182600
Molecular Weight (calculated)
52473.9 Da
IEP (calculated)
9.265
GRAVY (calculated)
0.097
Length
478 amino acids
Sequence
(BLAST)
(BLAST)
001: MNSCCFPLFI FAFVIFLRCL SPIEAATCHP DDEAGLLAFK SGITQDPTGI LSSWKKGTDC CSWKGVGCLT NRVTGLTING QSDVTGSFLS GTISPSLAKL
101: QHLVGIYFTN LRNITGSFPQ FLFQLPNVKQ VYFTNSRLSG PLPANIGALS ELGELSLDGN LFTGPIPSSI SNLTRLYLLN LGDNLLTGTI PLGLANLKIL
201: LSLNFGNNRL SETIPDIFKS MQKLQSLTLS RNKFSGNLPP SIASLKPILN YLDLSQNNLS GTIPTFLSNF KVLDSLDLSR NRFSGVVPKS LANMPKLFHL
301: NLSHNFLTGP LPAMKNVDGL ATLDLSYNQF HLKTIPKWVT SSPSMYSLKL VKCGINMSLD NWKPVRPNIY FYIDLSENEI SGSLTWFFNL AHNLYEFQAS
401: GNKLRFDMGK LNLSERLESL DLSRNLIFGK VPMTVAKLQK LNLSHNHLCG KLPVTKFPAS AFVGNDCLCG SPLSPCKI
101: QHLVGIYFTN LRNITGSFPQ FLFQLPNVKQ VYFTNSRLSG PLPANIGALS ELGELSLDGN LFTGPIPSSI SNLTRLYLLN LGDNLLTGTI PLGLANLKIL
201: LSLNFGNNRL SETIPDIFKS MQKLQSLTLS RNKFSGNLPP SIASLKPILN YLDLSQNNLS GTIPTFLSNF KVLDSLDLSR NRFSGVVPKS LANMPKLFHL
301: NLSHNFLTGP LPAMKNVDGL ATLDLSYNQF HLKTIPKWVT SSPSMYSLKL VKCGINMSLD NWKPVRPNIY FYIDLSENEI SGSLTWFFNL AHNLYEFQAS
401: GNKLRFDMGK LNLSERLESL DLSRNLIFGK VPMTVAKLQK LNLSHNHLCG KLPVTKFPAS AFVGNDCLCG SPLSPCKI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.