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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, extracellular, vacuole

Predictor Summary:
  • endoplasmic reticulum 5
  • golgi 5
  • extracellular 6
  • vacuole 5
  • plasma membrane 5
Predictors GFP MS/MS Papers
Winner Takes All:extracellular, plasma membrane, vacuole
Any Predictor:secretory
BaCelLo:endoplasmic reticulum, extracellular, golgi
iPSORT:secretory
MultiLoc:plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:extracellular
YLoc:vacuole
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra010209.1-P Field mustard extracellular 81.59 81.59
AT1G33612.1 Thale cress extracellular 63.39 66.59
AT1G33670.1 Thale cress extracellular 62.76 65.93
AT1G33590.2 Thale cress plastid 70.08 65.18
AT1G33600.1 Thale cress extracellular 64.85 64.85
AT2G26380.1 Thale cress endoplasmic reticulum, extracellular 64.85 64.58
PGSC0003DMT400043544 Potato extracellular 55.65 55.65
Solyc10g052880.1.1 Tomato extracellular 53.97 53.97
KRH56366 Soybean nucleus 53.77 52.56
AT3G12145.1 Thale cress extracellular 21.97 32.31
AT3G20820.1 Thale cress extracellular 24.27 31.78
AT5G12940.1 Thale cress extracellular 24.48 31.54
AT5G06860.1 Thale cress extracellular 20.5 29.7
AT3G12610.1 Thale cress extracellular 23.01 29.57
AT5G06870.1 Thale cress extracellular 20.08 29.09
VIT_18s0089g00010.t01 Wine grape plasma membrane 56.28 28.17
AT5G23400.1 Thale cress vacuole 34.1 27.67
Protein Annotations
Gene3D:3.80.10.10MapMan:35.1EntrezGene:840255ProteinID:AEE31609.1ArrayExpress:AT1G33610EnsemblPlantsGene:AT1G33610
RefSeq:AT1G33610TAIR:AT1G33610RefSeq:AT1G33610-TAIR-GEnsemblPlants:AT1G33610.1TAIR:AT1G33610.1Unigene:At.16845
UniProt:F4HR91GO:GO:0003674GO:GO:0005488GO:GO:0005515InterPro:IPR001611InterPro:IPR032675
InterPro:LRR_N_plant-typInterPro:LRR_dom_sfInterPro:Leu-rich_rptRefSeq:NP_174625.3PFAM:PF08263PFAM:PF13855
PO:PO:0000037PO:PO:0000293PO:PO:0005417PO:PO:0007064PO:PO:0007098PO:PO:0007115
PO:PO:0007123PO:PO:0009005PO:PO:0009025PO:PO:0020038PRINTS:PR00019PANTHER:PTHR45271
SUPFAM:SSF52058SignalP:SignalP-noTMUniParc:UPI0001E92AA8:::
Description
Leucine-rich repeat (LRR) family protein [Source:UniProtKB/TrEMBL;Acc:F4HR91]
Coordinates
chr1:+:12188678..12190461
Molecular Weight (calculated)
52669.2 Da
IEP (calculated)
8.667
GRAVY (calculated)
0.082
Length
478 amino acids
Sequence
(BLAST)
001: MNSLSFTLFI FSVITFLQCL SSTGAATCHP DDEAGLLAFK SGITQDPSGM LSSWKKGTSC CSWKGIICFN SDRVTMLELV GFPKKPERSL SGTLSPSLAK
101: LQHLSVISLG GHVNITGSFP KFLLQLPKLR YVDIQNNRLS GPLPANIGVL SLLEEIFLQG NKFTGPIPNS ISNLTRLSYL IFGGNLLTGT IPLGIANLKL
201: MQNLQLGDNR LSGTIPDIFE SMKLLKFLDL SSNEFYGKLP LSIATLAPTL LALQVSQNNL SGAIPNYISR FNKLEKLDLS KNRFSGVVPQ GFVNLTNINN
301: LDLSHNLLTG QFPDLTVNTI EYLDLSYNQF QLETIPQWVT LLPSVFLLKL AKCGIKMSLD DWKPAEPLYY HYIDLSKNEI SGSLERFLNE TRYLLEFRAA
401: ENKLRFDMGN LTFPRTLKTL DLSRNLVFGK VPVTVAGLQR LNLSQNHLCG ELPTTKFPAS AFAGNDCLCG SPLSPCKA
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.