Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 7
- vacuole 4
- plasma membrane 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra008869.1-P | Field mustard | extracellular, plasma membrane | 81.13 | 80.48 |
| CDY68308 | Canola | extracellular | 80.59 | 79.95 |
| CDY69775 | Canola | extracellular, plasma membrane | 80.05 | 78.78 |
| Bra008870.1-P | Field mustard | extracellular | 77.63 | 77.21 |
| CDY69275 | Canola | extracellular | 77.63 | 77.01 |
| CDY53975 | Canola | extracellular | 77.36 | 76.94 |
| CDX91155 | Canola | extracellular | 71.43 | 76.59 |
| Bra023383.1-P | Field mustard | extracellular | 71.43 | 76.37 |
| CDX85681 | Canola | extracellular | 70.62 | 75.94 |
| AT3G20820.1 | Thale cress | extracellular | 65.5 | 66.58 |
| PGSC0003DMT400003166 | Potato | extracellular, vacuole | 64.15 | 65.38 |
| VIT_06s0004g01750.t01 | Wine grape | extracellular | 63.88 | 65.11 |
| KRH23157 | Soybean | nucleus | 64.15 | 64.67 |
| Solyc11g056680.1.1 | Tomato | extracellular | 63.07 | 64.29 |
| GSMUA_Achr10P... | Banana | cytosol | 43.13 | 58.18 |
| GSMUA_Achr4P01520_001 | Banana | cytosol | 43.13 | 58.18 |
| KRH24680 | Soybean | extracellular | 56.6 | 57.53 |
| KRH29680 | Soybean | endoplasmic reticulum | 56.33 | 54.01 |
| AT3G12610.1 | Thale cress | extracellular | 53.91 | 53.76 |
| Os08t0505900-01 | Rice | extracellular | 54.72 | 53.42 |
| GSMUA_Achr3P03820_001 | Banana | endoplasmic reticulum, extracellular | 53.1 | 52.96 |
| TraesCS7D01G243300.1 | Wheat | extracellular | 54.18 | 52.89 |
| TraesCS7B01G146800.1 | Wheat | extracellular | 53.91 | 52.63 |
| TraesCS7A01G244600.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 53.64 | 52.37 |
| KRH24681 | Soybean | extracellular | 48.79 | 50.99 |
| HORVU7Hr1G050110.1 | Barley | vacuole | 53.1 | 50.77 |
| HORVU7Hr1G050140.1 | Barley | plastid | 53.1 | 50.51 |
| Zm00001d031434_P001 | Maize | extracellular | 50.94 | 49.61 |
| EES14271 | Sorghum | cytosol | 52.29 | 48.38 |
| AT5G06860.1 | Thale cress | extracellular | 29.65 | 33.33 |
| AT3G12145.1 | Thale cress | extracellular | 28.3 | 32.31 |
| AT5G06870.1 | Thale cress | extracellular | 28.3 | 31.82 |
| AT2G26380.1 | Thale cress | endoplasmic reticulum, extracellular | 35.58 | 27.5 |
| AT1G33600.1 | Thale cress | extracellular | 34.77 | 26.99 |
| AT1G33612.1 | Thale cress | extracellular | 30.46 | 24.84 |
| AT1G33610.1 | Thale cress | extracellular, plasma membrane, vacuole | 31.54 | 24.48 |
| AT1G33590.2 | Thale cress | plastid | 33.42 | 24.12 |
| AT5G23400.1 | Thale cress | vacuole | 38.01 | 23.94 |
| AT1G33670.1 | Thale cress | extracellular | 28.57 | 23.3 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:831134 | ProteinID:AED91833.1 | ArrayExpress:AT5G12940 | EnsemblPlantsGene:AT5G12940 |
| RefSeq:AT5G12940 | TAIR:AT5G12940 | RefSeq:AT5G12940-TAIR-G | EnsemblPlants:AT5G12940.1 | TAIR:AT5G12940.1 | EMBL:BT008694 |
| ProteinID:CAB88258.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001611 | InterPro:IPR032675 |
| InterPro:LRR_N_plant-typ | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt | RefSeq:NP_196798.1 | PFAM:PF00560 | PFAM:PF08263 |
| PFAM:PF13855 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001185 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PANTHER:PTHR44401 | PANTHER:PTHR44401:SF2 | UniProt:Q9LXU5 | SUPFAM:SSF52058 | SignalP:SignalP-noTM | TMHMM:TMhelix |
| UniParc:UPI000009E08F | SEG:seg | : | : | : | : |
Description
Leucine-rich repeat (LRR) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LXU5]
Coordinates
chr5:+:4087689..4089146
Molecular Weight (calculated)
39955.2 Da
IEP (calculated)
9.893
GRAVY (calculated)
0.197
Length
371 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTKKSLVIL LTNVVVFLLL STTVHSCLPS DRAALLEFRA KLNEPYIGVF NTWKGLDCCK GWYGVSCDPN TRRVAGITLR GESEDPLFQK AKRSGLMTGS
101: ISPSICKLTR LSGIIIADWK GISGVIPSCI ENLPFLRHLD LVGNKFSGVI PANIGKLLRL KVLNLADNHL YGVIPPSITR LVSLSHLDLR NNNISGVIPR
201: DIGRLKMVSR VLLSGNKISG QIPDSLTRIY RLADLELSMN RLTGPIPASF GKMSVLATLN LDGNLISGMI PGSLLASSIS NLNLSGNLIT GSIPNTFGPR
301: SYFTVLDLAN NRLQGPIPAS ITAASFIGHL DVSHNHLCGK IPMGSPFDHL DATSFAYNAC LCGKPLGNCK K
101: ISPSICKLTR LSGIIIADWK GISGVIPSCI ENLPFLRHLD LVGNKFSGVI PANIGKLLRL KVLNLADNHL YGVIPPSITR LVSLSHLDLR NNNISGVIPR
201: DIGRLKMVSR VLLSGNKISG QIPDSLTRIY RLADLELSMN RLTGPIPASF GKMSVLATLN LDGNLISGMI PGSLLASSIS NLNLSGNLIT GSIPNTFGPR
301: SYFTVLDLAN NRLQGPIPAS ITAASFIGHL DVSHNHLCGK IPMGSPFDHL DATSFAYNAC LCGKPLGNCK K
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.