Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 6
- golgi 5
- extracellular 7
- vacuole 4
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX98965 | Canola | extracellular | 83.64 | 83.13 |
| Bra009234.1-P | Field mustard | extracellular | 82.73 | 82.48 |
| CDX70060 | Canola | extracellular | 82.73 | 82.23 |
| CDX70058 | Canola | extracellular | 78.18 | 77.25 |
| AT5G06870.1 | Thale cress | extracellular | 76.36 | 76.36 |
| Bra009235.1-P | Field mustard | extracellular | 77.27 | 76.35 |
| CDX98966 | Canola | extracellular | 76.97 | 76.05 |
| CDX70059 | Canola | extracellular | 76.97 | 76.05 |
| Bra009236.1-P | Field mustard | extracellular | 76.36 | 75.45 |
| CDX98967 | Canola | extracellular | 76.36 | 75.0 |
| CDX70057 | Canola | extracellular | 75.76 | 74.4 |
| Bra009237.1-P | Field mustard | extracellular | 75.15 | 73.81 |
| PGSC0003DMT400057136 | Potato | extracellular | 61.21 | 61.59 |
| Solyc07g065090.1.1 | Tomato | extracellular | 60.91 | 61.47 |
| VIT_08s0007g07690.t01 | Wine grape | extracellular | 62.73 | 60.17 |
| KRG95348 | Soybean | mitochondrion | 61.52 | 57.83 |
| KRH12977 | Soybean | nucleus | 57.27 | 55.75 |
| AT3G12145.1 | Thale cress | extracellular | 53.64 | 54.46 |
| TraesCS3A01G459300.1 | Wheat | cytosol | 23.64 | 52.7 |
| KRH12976 | Soybean | cytosol | 56.67 | 50.27 |
| TraesCS3A01G459200.1 | Wheat | extracellular | 48.79 | 47.35 |
| TraesCS3D01G451800.1 | Wheat | extracellular | 48.48 | 47.06 |
| TraesCS3B01G498900.1 | Wheat | extracellular | 47.58 | 46.18 |
| TraesCS3D01G451400.1 | Wheat | extracellular | 46.97 | 45.72 |
| TraesCS3D01G451900.1 | Wheat | extracellular | 46.97 | 45.72 |
| TraesCS3A01G459000.1 | Wheat | extracellular | 46.67 | 45.16 |
| HORVU3Hr1G098730.2 | Barley | endoplasmic reticulum, extracellular, mitochondrion | 48.48 | 44.82 |
| GSMUA_Achr9P12430_001 | Banana | extracellular | 40.91 | 44.7 |
| Zm00001d035753_P001 | Maize | extracellular | 46.06 | 44.57 |
| TraesCS3D01G451500.1 | Wheat | extracellular | 44.85 | 44.31 |
| Os05t0104200-01 | Rice | extracellular | 41.21 | 44.01 |
| HORVU3Hr1G098610.1 | Barley | extracellular | 44.55 | 43.75 |
| EES17529 | Sorghum | extracellular | 45.15 | 43.7 |
| EES17528 | Sorghum | extracellular | 44.55 | 43.36 |
| TraesCS7D01G200000.1 | Wheat | cytosol | 40.91 | 43.13 |
| Zm00001d035756_P001 | Maize | vacuole | 45.45 | 42.86 |
| TraesCS1A01G012600.1 | Wheat | extracellular | 42.42 | 41.67 |
| TraesCS1D01G010800.1 | Wheat | extracellular | 42.42 | 41.54 |
| Os05t0104150-01 | Rice | extracellular | 42.73 | 41.23 |
| TraesCS1B01G017300.1 | Wheat | extracellular | 41.52 | 40.65 |
| Os05t0104600-01 | Rice | extracellular | 41.52 | 40.41 |
| TraesCS7B01G103900.1 | Wheat | extracellular | 40.3 | 39.47 |
| TraesCS2A01G470500.1 | Wheat | extracellular | 39.7 | 38.3 |
| TraesCS2D01G470400.1 | Wheat | extracellular | 39.39 | 38.01 |
| HORVU1Hr1G002410.1 | Barley | endoplasmic reticulum, vacuole | 41.52 | 37.23 |
| EES17527 | Sorghum | extracellular, plastid | 44.24 | 37.15 |
| TraesCS2B01G493300.1 | Wheat | extracellular | 38.79 | 37.1 |
| TraesCS2B01G493200.1 | Wheat | endoplasmic reticulum, extracellular | 38.18 | 36.84 |
| TraesCS2D01G470500.1 | Wheat | extracellular, vacuole | 37.88 | 36.44 |
| HORVU2Hr1G106620.1 | Barley | extracellular | 36.97 | 35.88 |
| TraesCS2A01G470600.1 | Wheat | extracellular | 36.67 | 35.8 |
| Os05t0104700-01 | Rice | extracellular | 42.73 | 35.16 |
| AT3G12610.1 | Thale cress | extracellular | 34.24 | 30.38 |
| AT5G12940.1 | Thale cress | extracellular | 33.33 | 29.65 |
| TraesCS7A01G197500.1 | Wheat | extracellular | 16.36 | 29.51 |
| AT3G20820.1 | Thale cress | extracellular | 30.91 | 27.95 |
| AT1G33600.1 | Thale cress | extracellular | 34.55 | 23.85 |
| AT2G26380.1 | Thale cress | endoplasmic reticulum, extracellular | 32.42 | 22.29 |
| AT1G33670.1 | Thale cress | extracellular | 28.48 | 20.66 |
| AT1G33590.2 | Thale cress | plastid | 32.12 | 20.62 |
| AT1G33610.1 | Thale cress | extracellular, plasma membrane, vacuole | 29.7 | 20.5 |
| AT1G33612.1 | Thale cress | extracellular | 27.58 | 20.0 |
| AT5G23400.1 | Thale cress | vacuole | 33.33 | 18.68 |
Protein Annotations
| MapMan:26.8.3.4 | Gene3D:3.80.10.10 | EntrezGene:830577 | UniProt:A0A178UBN4 | ProteinID:AED91076.1 | EMBL:AF229249 |
| ArrayExpress:AT5G06860 | EnsemblPlantsGene:AT5G06860 | RefSeq:AT5G06860 | TAIR:AT5G06860 | RefSeq:AT5G06860-TAIR-G | EnsemblPlants:AT5G06860.1 |
| TAIR:AT5G06860.1 | EMBL:AY048295 | EMBL:AY133567 | ProteinID:BAB11144.1 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005618 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005794 | GO:GO:0008150 | GO:GO:0009505 | GO:GO:0009506 | GO:GO:0016020 |
| GO:GO:0030234 | GO:GO:0030312 | GO:GO:0043086 | GO:GO:0090353 | InterPro:IPR001611 | InterPro:IPR032675 |
| InterPro:LRR_N_plant-typ | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt | RefSeq:NP_196304.1 | ProteinID:OAO90522.1 | PFAM:PF00560 |
| PFAM:PF08263 | Symbol:PGIP1 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PANTHER:PTHR44138 | UniProt:Q9M5J9 | SUPFAM:SSF52058 | SignalP:SignalP-noTM | UniParc:UPI00000014EF | SEG:seg |
Description
PGIP1PGIP1 [Source:UniProtKB/TrEMBL;Acc:A0A178UBN4]
Coordinates
chr5:+:2132350..2133587
Molecular Weight (calculated)
36691.3 Da
IEP (calculated)
8.046
GRAVY (calculated)
-0.091
Length
330 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKTATLCLL FLFTFLTTCL SKDLCNQNDK NTLLKIKKSL NNPYHLASWD PQTDCCSWYC LECGDATVNH RVTALTIFSG QISGQIPAEV GDLPYLETLV
101: FRKLSNLTGT IQPTIAKLKN LRMLRLSWTN LTGPIPDFIS QLKNLEFLEL SFNDLSGSIP SSLSTLPKIL ALELSRNKLT GSIPESFGSF PGTVPDLRLS
201: HNQLSGPIPK SLGNIDFNRI DLSRNKLQGD ASMLFGSNKT TWSIDLSRNM FQFDISKVDI PKTLGILDLN HNGITGNIPV QWTEAPLQFF NVSYNKLCGH
301: IPTGGKLQTF DSYSYFHNKC LCGAPLEICK
101: FRKLSNLTGT IQPTIAKLKN LRMLRLSWTN LTGPIPDFIS QLKNLEFLEL SFNDLSGSIP SSLSTLPKIL ALELSRNKLT GSIPESFGSF PGTVPDLRLS
201: HNQLSGPIPK SLGNIDFNRI DLSRNKLQGD ASMLFGSNKT TWSIDLSRNM FQFDISKVDI PKTLGILDLN HNGITGNIPV QWTEAPLQFF NVSYNKLCGH
301: IPTGGKLQTF DSYSYFHNKC LCGAPLEICK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.