Factsheet for PGSC0003DMT400057136

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

cytosol: 22313117
extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g065090.1.1	Tomato	extracellular	94.82	95.11
AT5G06860.1	Thale cress	extracellular	61.59	61.21
Bra009234.1-P	Field mustard	extracellular	59.76	59.21
CDX98965	Canola	extracellular	59.76	59.04
CDX70060	Canola	extracellular	59.76	59.04
VIT_08s0007g07690.t01	Wine grape	extracellular	61.89	59.01
KRG95348	Soybean	mitochondrion	63.11	58.97
CDX98966	Canola	extracellular	58.54	57.48
CDX70058	Canola	extracellular	58.23	57.19
CDX70059	Canola	extracellular	58.23	57.19
Bra009235.1-P	Field mustard	extracellular	58.23	57.19
Bra009236.1-P	Field mustard	extracellular	57.93	56.89
CDX70057	Canola	extracellular	57.93	56.55
CDX98967	Canola	extracellular	57.62	56.25
Bra009237.1-P	Field mustard	extracellular	57.32	55.95
AT5G06870.1	Thale cress	extracellular	56.1	55.76
Bra009238.1-P	Field mustard	extracellular	55.79	55.12
CDY58887	Canola	extracellular	54.27	53.94
CDY58884	Canola	extracellular	54.27	53.78
Bra005919.1-P	Field mustard	extracellular	53.96	53.47
Bra005918.1-P	Field mustard	extracellular	33.23	53.17
KRH12977	Soybean	nucleus	54.88	53.1
PGSC0003DMT400021883	Potato	extracellular	53.96	52.99
CDY58888	Canola	extracellular	54.88	52.63
Bra005917.1-P	Field mustard	extracellular	54.88	52.63
Bra005916.1-P	Field mustard	extracellular	55.49	52.45
CDY58889	Canola	extracellular	55.18	52.16
KRH12976	Soybean	cytosol	59.15	52.15
CDX81023	Canola	extracellular	53.96	51.75
CDX98968	Canola	endoplasmic reticulum, extracellular, vacuole	56.71	48.31
CDX70056	Canola	extracellular	55.79	45.19
CDX81022	Canola	extracellular, plasma membrane	48.48	31.42
PGSC0003DMT400003166	Potato	extracellular, vacuole	33.54	30.22
PGSC0003DMT400017733	Potato	extracellular	29.27	26.09
PGSC0003DMT400043544	Potato	extracellular	33.54	23.01
PGSC0003DMT400010749	Potato	extracellular	23.78	22.35
PGSC0003DMT400065091	Potato	extracellular	35.67	19.73
PGSC0003DMT400009116	Potato	endoplasmic reticulum, extracellular	31.71	16.17
PGSC0003DMT400058200	Potato	extracellular, vacuole	31.1	16.04

Protein Annotations

EntrezGene:102596198	MapMan:26.8.3.4	Gene3D:3.80.10.10	ProteinID:AAT77429	ProteinID:AAT77429.1	EMBL:AY662681
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_N_plant-typ
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	UniProt:M1C0H5	PFAM:PF08263	PFAM:PF13855	EnsemblPlantsGene:PGSC0003DMG401022197
PGSC:PGSC0003DMG401022197	EnsemblPlants:PGSC0003DMT400057136	PANTHER:PTHR44138	SUPFAM:SSF52058	SignalP:SignalP-noTM	UniParc:UPI0002948FF7
RefSeq:XP_006346175.1	:	:	:	:	:

Description

Polygalacturonase inhibitor protein [Source:PGSC_GENE;Acc:PGSC0003DMG401022197]

Coordinates

chr7:-:55219099..55220459

Molecular Weight (calculated)

36639.2 Da

IEP (calculated)

8.310

GRAVY (calculated)

-0.087

Length

328 amino acids

Sequence
(BLAST)

001: MNLNLSLLVV IFLCFASPSV SVRCNPKDKK VLLQIKEDLG NPYHLASWDP NTDCCYWYVV KCDRKTNRIN ALTVFQANIS GQIPAAVGDL PYLETLQFHH
101: ITNLTGTIQP AIAKLTNLKM LRLSFTNLTG PIPEFLSQLK NLTLLELNYN QLTGTIPSSL SQLPNLLAIY LDRNKLTGTI PESFGRFKGP NIPDLYLSHN
201: SLTGKVPTSL GDLNFSRLDF SRNKLEGDVS FLFGKNKTSQ IIDLSRNSLE FDISKSEFAE SLISLDLNHN RIFGSLPQGL KDVPLQFFNV SYNRLCGQIP
301: QGGTLQSFDV YSYLHNKCLC GSPLPDCK

Best Arabidopsis Sequence Match ( AT5G06860.1 )
(BLAST)

001: MDKTATLCLL FLFTFLTTCL SKDLCNQNDK NTLLKIKKSL NNPYHLASWD PQTDCCSWYC LECGDATVNH RVTALTIFSG QISGQIPAEV GDLPYLETLV
101: FRKLSNLTGT IQPTIAKLKN LRMLRLSWTN LTGPIPDFIS QLKNLEFLEL SFNDLSGSIP SSLSTLPKIL ALELSRNKLT GSIPESFGSF PGTVPDLRLS
201: HNQLSGPIPK SLGNIDFNRI DLSRNKLQGD ASMLFGSNKT TWSIDLSRNM FQFDISKVDI PKTLGILDLN HNGITGNIPV QWTEAPLQFF NVSYNKLCGH
301: IPTGGKLQTF DSYSYFHNKC LCGAPLEICK

Arabidopsis Description

PGIP1PGIP1 [Source:UniProtKB/TrEMBL;Acc:A0A178UBN4]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.