Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 7
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g011050.2.1 | Tomato | endoplasmic reticulum, extracellular, vacuole | 94.84 | 94.57 |
| PGSC0003DMT400058200 | Potato | extracellular, vacuole | 49.28 | 27.04 |
| PGSC0003DMT400003166 | Potato | extracellular, vacuole | 26.93 | 25.82 |
| PGSC0003DMT400017733 | Potato | extracellular | 26.93 | 25.54 |
| PGSC0003DMT400043544 | Potato | extracellular | 34.1 | 24.9 |
| PGSC0003DMT400057136 | Potato | extracellular | 22.35 | 23.78 |
| PGSC0003DMT400021883 | Potato | extracellular | 20.06 | 20.96 |
| PGSC0003DMT400009116 | Potato | endoplasmic reticulum, extracellular | 35.24 | 19.13 |
| PGSC0003DMT400065091 | Potato | extracellular | 31.81 | 18.72 |
| KRH56365 | Soybean | cytosol | 0.57 | 1.21 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001611 |
| InterPro:IPR032675 | InterPro:LRR_N_plant-typ | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt | InterPro:Leu-rich_rpt_typical-subtyp | UniProt:M0ZYI0 |
| PFAM:PF08263 | PFAM:PF13855 | EnsemblPlantsGene:PGSC0003DMG400004195 | PGSC:PGSC0003DMG400004195 | EnsemblPlants:PGSC0003DMT400010749 | PFscan:PS51450 |
| PANTHER:PTHR44401 | PANTHER:PTHR44401:SF1 | SMART:SM00369 | SUPFAM:SSF52058 | SignalP:SignalP-noTM | UniParc:UPI000296EF01 |
| SEG:seg | : | : | : | : | : |
Description
Leucine rich repeat protein [Source:PGSC_GENE;Acc:PGSC0003DMG400004195]
Coordinates
chr1:-:51579728..51581797
Molecular Weight (calculated)
37856.8 Da
IEP (calculated)
6.778
GRAVY (calculated)
0.087
Length
349 amino acids
Sequence
(BLAST)
(BLAST)
001: MASHQFICFL AMISLMIINI SANKACHPDD LKGLNDFKAS IHSDTSGRLS KWIGQDCCNW PGISCNSTTN RVVEIYLPGH YVSGDDESPN FVSSTMSGSI
101: SPSISLLTSL QVIDLNKLVG LTGQIPESIG VLKNLKELNL QTNQISSTIP ESVFTLTSLT TLNLENNHLT GEISENIGNL QALQKLFLSN NSFTGKIPVS
201: ITKLHSISTI HLEKNQLVGE IQLPLTPSQW PLIKTLALDN NALTGAIPDS IGYLTTLSSL SISNNQFTGP IPSSLGNIKQ LQILKVNNNN LAVEMLPTTI
301: CGLTELSVLY VSQNKIHGPL PGCLYSFKYL LDVDVPFKRT ATLPMGVHK
101: SPSISLLTSL QVIDLNKLVG LTGQIPESIG VLKNLKELNL QTNQISSTIP ESVFTLTSLT TLNLENNHLT GEISENIGNL QALQKLFLSN NSFTGKIPVS
201: ITKLHSISTI HLEKNQLVGE IQLPLTPSQW PLIKTLALDN NALTGAIPDS IGYLTTLSSL SISNNQFTGP IPSSLGNIKQ LQILKVNNNN LAVEMLPTTI
301: CGLTELSVLY VSQNKIHGPL PGCLYSFKYL LDVDVPFKRT ATLPMGVHK
001: MNSSFTLFIF TFVIFLQCLN PTGAATCHPD DEAGLLAFKA GITRDPSGIL SSWKKGTACC SWNGVTCLTT DRVSALSVAG QADVAGSFLS GTLSPSLAKL
101: KHLDGIYFTD LKNITGSFPQ FLFQLPNLKY VYIENNRLSG TLPANIGALS QLEAFSLEGN RFTGPIPSSI SNLTLLTQLK LGNNLLTGTI PLGVANLKLM
201: SYLNLGGNRL TGTIPDIFKS MPELRSLTLS RNGFSGNLPP SIASLAPILR FLELGHNKLS GTIPNFLSNF KALDTLDLSK NRFSGVIPKS FANLTKIFNL
301: DLSHNLLTDP FPVLNVKGIE SLDLSYNQFH LNTIPKWVTS SPIIFSLKLA KCGIKMSLDD WKPAQTFYYD FIDLSENEIT GSPARFLNQT EYLVEFKAAG
401: NKLRFDMGKL TFAKTLTTLD ISRNLVFGKV PAMVAGLKTL NVSHNHLCGK LPVTKFPASA FVGNDCLCGS PLSPCKA
101: KHLDGIYFTD LKNITGSFPQ FLFQLPNLKY VYIENNRLSG TLPANIGALS QLEAFSLEGN RFTGPIPSSI SNLTLLTQLK LGNNLLTGTI PLGVANLKLM
201: SYLNLGGNRL TGTIPDIFKS MPELRSLTLS RNGFSGNLPP SIASLAPILR FLELGHNKLS GTIPNFLSNF KALDTLDLSK NRFSGVIPKS FANLTKIFNL
301: DLSHNLLTDP FPVLNVKGIE SLDLSYNQFH LNTIPKWVTS SPIIFSLKLA KCGIKMSLDD WKPAQTFYYD FIDLSENEIT GSPARFLNQT EYLVEFKAAG
401: NKLRFDMGKL TFAKTLTTLD ISRNLVFGKV PAMVAGLKTL NVSHNHLCGK LPVTKFPASA FVGNDCLCGS PLSPCKA
Arabidopsis Description
Leucine-rich repeat (LRR) family protein [Source:TAIR;Acc:AT1G33590]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.