Factsheet for PGSC0003DMT400003166

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

nucleus 1
plastid 2
extracellular 6
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g056680.1.1	Tomato	extracellular	95.05	95.05
KRH23157	Soybean	nucleus	72.25	71.47
VIT_06s0004g01750.t01	Wine grape	extracellular	70.33	70.33
CDY60388	Canola	extracellular	68.68	68.49
CDY27559	Canola	extracellular	68.41	68.22
Bra035741.1-P	Field mustard	extracellular	67.86	67.67
CDY19601	Canola	extracellular	67.86	67.67
AT3G20820.1	Thale cress	extracellular	67.31	67.12
CDY06385	Canola	extracellular	67.31	67.12
AT5G12940.1	Thale cress	extracellular	65.38	64.15
Bra023925.1-P	Field mustard	extracellular	65.93	63.83
GSMUA_Achr10P...	Banana	cytosol	47.8	63.27
GSMUA_Achr4P01520_001	Banana	cytosol	47.53	62.91
Bra023383.1-P	Field mustard	extracellular	56.87	59.65
CDX85681	Canola	extracellular	56.32	59.42
Bra008869.1-P	Field mustard	extracellular, plasma membrane	60.99	59.36
PGSC0003DMT400017733	Potato	extracellular	59.62	58.97
CDY68308	Canola	extracellular	60.44	58.82
CDX91155	Canola	extracellular	55.77	58.67
CDY69775	Canola	extracellular, plasma membrane	59.89	57.82
KRH24680	Soybean	extracellular	57.69	57.53
GSMUA_Achr3P03820_001	Banana	endoplasmic reticulum, extracellular	58.52	57.26
Bra008870.1-P	Field mustard	extracellular	58.52	57.1
CDY53975	Canola	extracellular	58.24	56.84
KRH29680	Soybean	endoplasmic reticulum	60.16	56.59
CDY69275	Canola	extracellular	57.97	56.42
Os08t0505900-01	Rice	extracellular	58.24	55.79
KRH24681	Soybean	extracellular	53.57	54.93
TraesCS7D01G243300.1	Wheat	extracellular	57.14	54.74
TraesCS7B01G146800.1	Wheat	extracellular	57.14	54.74
TraesCS7A01G244600.1	Wheat	endoplasmic reticulum, extracellular, vacuole	57.14	54.74
HORVU7Hr1G050110.1	Barley	vacuole	57.42	53.87
HORVU7Hr1G050140.1	Barley	plastid	57.42	53.59
Zm00001d031434_P001	Maize	extracellular	53.85	51.44
EES14271	Sorghum	cytosol	56.59	51.37
PGSC0003DMT400057136	Potato	extracellular	30.22	33.54
PGSC0003DMT400021883	Potato	extracellular	30.49	33.23
PGSC0003DMT400010749	Potato	extracellular	25.82	26.93
PGSC0003DMT400043544	Potato	extracellular	34.89	26.57
PGSC0003DMT400065091	Potato	extracellular	37.91	23.27
PGSC0003DMT400058200	Potato	extracellular, vacuole	37.09	21.23
PGSC0003DMT400009116	Potato	endoplasmic reticulum, extracellular	34.07	19.28

Protein Annotations

EntrezGene:102587730	Gene3D:3.80.10.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	UniProt:M0ZL78
PFAM:PF08263	PFAM:PF13855	EnsemblPlantsGene:PGSC0003DMG400001252	PGSC:PGSC0003DMG400001252	EnsemblPlants:PGSC0003DMT400003166	PANTHER:PTHR44401
PANTHER:PTHR44401:SF2	SUPFAM:SSF52058	SignalP:SignalP-noTM	UniParc:UPI000294822F	RefSeq:XP_006354265.1	SEG:seg

Description

Leucine-rich repeat protein [Source:PGSC_GENE;Acc:PGSC0003DMG400001252]

Coordinates

chr11:+:33762171..33763494

Molecular Weight (calculated)

40237.7 Da

IEP (calculated)

8.400

GRAVY (calculated)

0.003

Length

364 amino acids

Sequence
(BLAST)

001: MGSFMYIVIL LLAIISTVHS CSPSDRAALL SFRAALNESY LGIFNSWKGY DCCHEWYGVS CDPTTHRVAD INLRGESEDP LFEKAHRTGY MTGTISPSIC
101: KLERLSSLTI ADWKGITGPI PSCITSLPFL RIIDLVGNKL TGSIPSTIGR LSRLTVLNVA ENQLTGYIPR SLTNLSSLMH LDLRNNFIYG NIPTNFGKLR
201: MLSRALLSRN KLTGHIPYSI SYIYRLSDLD LSLNKLSGSI PPSLGKMHVL ATLNLDGNNI TGTIPPSLIN SRINILNLSK NAIEGYIPDS FDERSYFMVM
301: DLSYNKLKGR IPKSISSATF IGHFDVSHNH LCGQIPEGSP FDHLEASSFT YNDCLCGKPL KPCH

Best Arabidopsis Sequence Match ( AT3G20820.1 )
(BLAST)

001: MNLNVVVLLL LLLISSATCC PPSDRRALLA FRSALHEPYL GIFNSWTGQD CCHNWYGISC DSLTHRVADI NLRGESEDPI FERAHRTGYM TGHISASICE
101: LTRLSAITIA DWKGISGEIP KCITRLPFLR TLDLIGNQIS GGIPYDIGRL NRLAVLNVAD NRISGSIPKS LTNLSSLMHL DLRNNLISGV IPSDVGRLKM
201: LSRALLSGNR ITGRIPESLT NIYRLADVDL SGNQLYGTIP PSLGRMSVLA TLNLDGNKIS GEIPQTLMTS SVMNLNLSRN LLQGKIPEGF GPRSYFTVLD
301: LSYNNLKGPI PRSISGASFI GHLDLSHNHL CGRIPVGSPF DHLEAASFMF NDCLCGKPLR ACLKN

Arabidopsis Description

Leucine-rich repeat (LRR) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LT39]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.