Factsheet for Bra023383.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 9
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular, nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85681	Canola	extracellular	97.98	98.55
Bra008869.1-P	Field mustard	extracellular, plasma membrane	80.4	74.6
Bra008870.1-P	Field mustard	extracellular	77.81	72.39
AT5G12940.1	Thale cress	extracellular	76.37	71.43
Bra035741.1-P	Field mustard	extracellular	63.98	60.82
KRH23157	Soybean	nucleus	62.54	58.97
VIT_06s0004g01750.t01	Wine grape	extracellular	59.94	57.14
Solyc11g056680.1.1	Tomato	extracellular	59.94	57.14
Bra023925.1-P	Field mustard	extracellular	61.67	56.91
PGSC0003DMT400003166	Potato	extracellular, vacuole	59.65	56.87
GSMUA_Achr10P...	Banana	cytosol	44.96	56.73
GSMUA_Achr4P01520_001	Banana	cytosol	44.67	56.36
KRH24680	Soybean	extracellular	54.76	52.05
Bra001460.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	53.6	50.0
Os08t0505900-01	Rice	extracellular	53.89	49.21
KRH29680	Soybean	endoplasmic reticulum	54.76	49.1
TraesCS7D01G243300.1	Wheat	extracellular	53.6	48.95
TraesCS7B01G146800.1	Wheat	extracellular	53.6	48.95
TraesCS7A01G244600.1	Wheat	endoplasmic reticulum, extracellular, vacuole	53.31	48.68
Bra038737.1-P	Field mustard	endoplasmic reticulum, extracellular	52.16	48.53
HORVU7Hr1G050110.1	Barley	vacuole	53.6	47.94
GSMUA_Achr3P03820_001	Banana	endoplasmic reticulum, extracellular	51.3	47.85
HORVU7Hr1G050140.1	Barley	plastid	53.6	47.69
Zm00001d031434_P001	Maize	extracellular	51.87	47.24
KRH24681	Soybean	extracellular	48.13	47.04
EES14271	Sorghum	cytosol	53.03	45.89
Bra005918.1-P	Field mustard	extracellular	20.46	34.63
Bra034774.1-P	Field mustard	extracellular	31.7	33.74
Bra009237.1-P	Field mustard	extracellular	30.26	31.25
Bra034773.1-P	Field mustard	cytosol	27.95	30.79
Bra038700.1-P	Field mustard	extracellular, vacuole	28.24	30.15
Bra009235.1-P	Field mustard	extracellular	28.82	29.94
Bra009236.1-P	Field mustard	extracellular	28.82	29.94
Bra009234.1-P	Field mustard	extracellular	28.53	29.91
Bra005919.1-P	Field mustard	extracellular	28.24	29.61
Bra005917.1-P	Field mustard	extracellular	28.53	28.95
Bra009238.1-P	Field mustard	extracellular	26.51	27.71
Bra005916.1-P	Field mustard	extracellular	27.67	27.67
Bra028006.1-P	Field mustard	endoplasmic reticulum, vacuole	32.85	23.8
Bra010209.1-P	Field mustard	extracellular	31.99	23.22
Bra009680.1-P	Field mustard	extracellular, vacuole	37.18	21.98
Bra026499.1-P	Field mustard	plastid	30.26	21.21
Bra016239.1-P	Field mustard	cytosol	14.41	19.38

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	EnsemblPlantsGene:Bra023383	EnsemblPlants:Bra023383.1	EnsemblPlants:Bra023383.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt	UniProt:M4E3N0	PFAM:PF00560	PFAM:PF08263	PFAM:PF13855	PFscan:PS51257
PANTHER:PTHR44401	PANTHER:PTHR44401:SF2	SUPFAM:SSF52058	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0002543412
SEG:seg	:	:	:	:	:

Description

AT5G12940 (E=3e-129) | leucine-rich repeat family protein

Coordinates

chrA02:+:3116057..3117175

Molecular Weight (calculated)

36842.0 Da

IEP (calculated)

8.850

GRAVY (calculated)

0.197

Length

347 amino acids

Sequence
(BLAST)

001: MDAKKKAITV VFCNAVVLLL ATVAAQACLP SDRAALLEFR SHLNEPYIGV FNSWKGQDCC HGWYGRAKRK GVMTGSISPA ICKLTQLSGV TLSDWEGISG
101: AIPACITNLP AMRHVDLVGN KISGVIPANI GNLAKLTVLN LADNQISGAI PASIARLTSL THLDLRNNGL TGVIPVYIGR LKMLSRVLLS GNKLSGQIPE
201: SLTRIYRLAD LELSMNRITG PIPPSFGRMS VLATLNLDGN LISGEIPGSL MTSSISNLNL SGNFISGKIP NAFGPRSYFT VLDLSNNRLE GVIPESITTA
301: SFIGHLDVSH NQLCGKIPAG SPFDHLDATS FGYNRCLCGT PLGDCGK

Best Arabidopsis Sequence Match ( AT5G12940.1 )
(BLAST)

001: MDTKKSLVIL LTNVVVFLLL STTVHSCLPS DRAALLEFRA KLNEPYIGVF NTWKGLDCCK GWYGVSCDPN TRRVAGITLR GESEDPLFQK AKRSGLMTGS
101: ISPSICKLTR LSGIIIADWK GISGVIPSCI ENLPFLRHLD LVGNKFSGVI PANIGKLLRL KVLNLADNHL YGVIPPSITR LVSLSHLDLR NNNISGVIPR
201: DIGRLKMVSR VLLSGNKISG QIPDSLTRIY RLADLELSMN RLTGPIPASF GKMSVLATLN LDGNLISGMI PGSLLASSIS NLNLSGNLIT GSIPNTFGPR
301: SYFTVLDLAN NRLQGPIPAS ITAASFIGHL DVSHNHLCGK IPMGSPFDHL DATSFAYNAC LCGKPLGNCK K

Arabidopsis Description

Leucine-rich repeat (LRR) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LXU5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.