Factsheet for Bra009236.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70058	Canola	extracellular	97.6	97.6
Bra009237.1-P	Field mustard	extracellular	88.32	87.8
Bra009235.1-P	Field mustard	extracellular	83.23	83.23
Bra009234.1-P	Field mustard	extracellular	76.05	76.74
AT5G06860.1	Thale cress	extracellular	75.45	76.36
Bra005918.1-P	Field mustard	extracellular	43.11	70.24
Bra009238.1-P	Field mustard	extracellular	69.16	69.58
Bra005919.1-P	Field mustard	extracellular	67.07	67.67
Bra005916.1-P	Field mustard	extracellular	67.96	65.42
Bra005917.1-P	Field mustard	extracellular	66.47	64.91
VIT_08s0007g07690.t01	Wine grape	extracellular	59.88	58.14
Solyc07g065090.1.1	Tomato	extracellular	56.89	58.1
PGSC0003DMT400057136	Potato	extracellular	56.89	57.93
TraesCS3A01G459300.1	Wheat	cytosol	24.85	56.08
KRG95348	Soybean	mitochondrion	57.78	54.99
KRH12977	Soybean	nucleus	54.19	53.39
Bra038700.1-P	Field mustard	extracellular, vacuole	51.2	52.62
Bra034774.1-P	Field mustard	extracellular	48.8	50.0
TraesCS3A01G459200.1	Wheat	extracellular	50.0	49.12
TraesCS3D01G451800.1	Wheat	extracellular	49.7	48.82
TraesCS3B01G498900.1	Wheat	extracellular	48.8	47.94
Bra034773.1-P	Field mustard	cytosol	45.21	47.94
KRH12976	Soybean	cytosol	52.69	47.31
TraesCS3D01G451400.1	Wheat	extracellular	47.9	47.2
GSMUA_Achr9P12430_001	Banana	extracellular	42.22	46.69
TraesCS3D01G451900.1	Wheat	extracellular	47.31	46.61
HORVU3Hr1G098730.2	Barley	endoplasmic reticulum, extracellular, mitochondrion	49.7	46.5
HORVU3Hr1G098610.1	Barley	extracellular	46.71	46.43
Zm00001d035753_P001	Maize	extracellular	47.31	46.33
EES17529	Sorghum	extracellular	47.01	46.04
TraesCS3A01G459000.1	Wheat	extracellular	47.01	46.04
TraesCS3D01G451500.1	Wheat	extracellular	45.21	45.21
EES17528	Sorghum	extracellular	44.91	44.25
TraesCS7D01G200000.1	Wheat	cytosol	41.32	44.09
Os05t0104200-01	Rice	extracellular	40.72	44.01
Zm00001d035756_P001	Maize	vacuole	46.11	44.0
Os05t0104150-01	Rice	extracellular	44.31	43.27
TraesCS1A01G012600.1	Wheat	extracellular	43.11	42.86
TraesCS1D01G010800.1	Wheat	extracellular	42.81	42.43
TraesCS7B01G103900.1	Wheat	extracellular	41.92	41.54
TraesCS1B01G017300.1	Wheat	extracellular	41.62	41.25
TraesCS2D01G470500.1	Wheat	extracellular, vacuole	41.92	40.82
Os05t0104600-01	Rice	extracellular	41.02	40.41
HORVU2Hr1G106620.1	Barley	extracellular	41.02	40.29
TraesCS2A01G470500.1	Wheat	extracellular	41.02	40.06
TraesCS2B01G493200.1	Wheat	endoplasmic reticulum, extracellular	41.02	40.06
TraesCS2D01G470400.1	Wheat	extracellular	40.72	39.77
TraesCS2A01G470600.1	Wheat	extracellular	40.12	39.65
TraesCS2B01G493300.1	Wheat	extracellular	40.42	39.13
HORVU1Hr1G002410.1	Barley	endoplasmic reticulum, vacuole	41.92	38.04
EES17527	Sorghum	extracellular, plastid	44.31	37.66
Os05t0104700-01	Rice	extracellular	42.52	35.41
TraesCS7A01G197500.1	Wheat	extracellular	17.07	31.15
Bra023383.1-P	Field mustard	extracellular	29.94	28.82
Bra035741.1-P	Field mustard	extracellular	31.44	28.77
Bra038737.1-P	Field mustard	endoplasmic reticulum, extracellular	30.84	27.61
Bra001460.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	30.24	27.15
Bra008869.1-P	Field mustard	extracellular, plasma membrane	29.94	26.74
Bra023925.1-P	Field mustard	extracellular	29.94	26.6
Bra008870.1-P	Field mustard	extracellular	29.04	26.01
Bra010209.1-P	Field mustard	extracellular	30.84	21.55
Bra028006.1-P	Field mustard	endoplasmic reticulum, vacuole	30.84	21.5
Bra009680.1-P	Field mustard	extracellular, vacuole	35.33	20.1
Bra026499.1-P	Field mustard	plastid	28.44	19.19
Bra016239.1-P	Field mustard	cytosol	12.87	16.67

Protein Annotations

EnsemblPlants:Bra009236.1	EnsemblPlants:Bra009236.1-P	EnsemblPlantsGene:Bra009236	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt
PANTHER:PTHR44138	PFAM:PF08263	PFAM:PF13855	PFscan:PS51450	PRINTS:PR00019	SEG:seg
SignalP:SignalP-noTM	SUPFAM:SSF52058	UniParc:UPI0002545394	UniProt:M4CYD9	MapMan:26.8.3.4	:

Description

AT5G06860 (E=5e-138) PGIP1, ATPGIP1 | PGIP1 (POLYGALACTURONASE INHIBITING PROTEIN 1); protein binding

Coordinates

chrA10:+:15769158..15770259

Molecular Weight (calculated)

37244.7 Da

IEP (calculated)

7.734

GRAVY (calculated)

-0.071

Length

334 amino acids

Sequence
(BLAST)

001: MDHKTNTTLL FSLLFFITHL SNALSKDLCN ENDKNTLLKI KKSLNNPYHL ASWHPETDCC SWYCLECGDA TVNHRVISLT LFAGQISGQL PPAGGDLPYL
101: QKLVFRKLTN LTGQIPHSIT KLKYLTFLWL SWTNLTGPVP DFLSQLVNLD YLNLSFNELS GSVPSSLSLL PKLTYIDLSR NKLTGTMPES FGSFPGEVPY
201: LILSHNQLSG STPKSLGNLD FNRIDFSRNK LTGDASMLFG ANKTTFSIDL SRNMFQFDLS RVVLPESLGV LDLNHNGITG SIPVQWTEYS LQILNVSYNR
301: LCGPIPTGGS LQRFDSYIYF HNKCLCGAPL DSCK

Best Arabidopsis Sequence Match ( AT5G06860.1 )
(BLAST)

001: MDKTATLCLL FLFTFLTTCL SKDLCNQNDK NTLLKIKKSL NNPYHLASWD PQTDCCSWYC LECGDATVNH RVTALTIFSG QISGQIPAEV GDLPYLETLV
101: FRKLSNLTGT IQPTIAKLKN LRMLRLSWTN LTGPIPDFIS QLKNLEFLEL SFNDLSGSIP SSLSTLPKIL ALELSRNKLT GSIPESFGSF PGTVPDLRLS
201: HNQLSGPIPK SLGNIDFNRI DLSRNKLQGD ASMLFGSNKT TWSIDLSRNM FQFDISKVDI PKTLGILDLN HNGITGNIPV QWTEAPLQFF NVSYNKLCGH
301: IPTGGKLQTF DSYSYFHNKC LCGAPLEICK

Arabidopsis Description

PGIP1PGIP1 [Source:UniProtKB/TrEMBL;Acc:A0A178UBN4]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.