Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G451900.1 | Wheat | extracellular | 94.59 | 41.3 |
| TraesCS3A01G459200.1 | Wheat | extracellular | 87.16 | 37.94 |
| TraesCS3A01G459000.1 | Wheat | extracellular | 82.43 | 35.78 |
| Bra005918.1-P | Field mustard | extracellular | 49.32 | 35.61 |
| EES17528 | Sorghum | extracellular | 77.03 | 33.63 |
| TraesCS1A01G012600.1 | Wheat | extracellular | 61.49 | 27.08 |
| TraesCS2A01G470500.1 | Wheat | extracellular | 57.43 | 24.85 |
| Bra009236.1-P | Field mustard | extracellular | 56.08 | 24.85 |
| CDX70058 | Canola | extracellular | 56.08 | 24.85 |
| CDX98967 | Canola | extracellular | 56.08 | 24.7 |
| Bra009237.1-P | Field mustard | extracellular | 56.08 | 24.7 |
| CDX70057 | Canola | extracellular | 56.08 | 24.7 |
| TraesCS2A01G470600.1 | Wheat | extracellular | 56.08 | 24.56 |
| CDX98965 | Canola | extracellular | 53.38 | 23.8 |
| AT5G06860.1 | Thale cress | extracellular | 52.7 | 23.64 |
| Bra009234.1-P | Field mustard | extracellular | 52.7 | 23.57 |
| CDX70060 | Canola | extracellular | 52.7 | 23.49 |
| CDX98966 | Canola | extracellular | 52.03 | 23.05 |
| TraesCS7A01G189800.1 | Wheat | endoplasmic reticulum, extracellular | 43.92 | 23.05 |
| AT5G06870.1 | Thale cress | extracellular | 51.35 | 23.03 |
| CDY58887 | Canola | extracellular | 50.68 | 22.73 |
| CDY58884 | Canola | extracellular | 50.68 | 22.66 |
| Bra005919.1-P | Field mustard | extracellular | 50.68 | 22.66 |
| Bra009238.1-P | Field mustard | extracellular | 50.68 | 22.59 |
| CDX81023 | Canola | extracellular | 52.03 | 22.51 |
| CDX70059 | Canola | extracellular | 50.68 | 22.46 |
| Bra009235.1-P | Field mustard | extracellular | 50.68 | 22.46 |
| KRG95348 | Soybean | mitochondrion | 52.7 | 22.22 |
| Bra005917.1-P | Field mustard | extracellular | 51.35 | 22.22 |
| CDY58888 | Canola | extracellular | 51.35 | 22.22 |
| Solyc09g014590.2.1 | Tomato | extracellular | 45.27 | 21.47 |
| PGSC0003DMT400021883 | Potato | extracellular | 47.3 | 20.96 |
| Solyc09g014480.1.1 | Tomato | extracellular | 46.62 | 20.6 |
| KRH12976 | Soybean | cytosol | 51.35 | 20.43 |
| Bra005916.1-P | Field mustard | extracellular | 47.3 | 20.17 |
| CDY58889 | Canola | extracellular | 46.62 | 19.88 |
| CDX98968 | Canola | endoplasmic reticulum, extracellular, vacuole | 50.68 | 19.48 |
| KRH12977 | Soybean | nucleus | 44.59 | 19.47 |
| VIT_13s0064g01370.t01 | Wine grape | extracellular | 43.24 | 19.28 |
| CDX70056 | Canola | extracellular | 50.68 | 18.52 |
| TraesCS5A01G266200.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 38.51 | 17.98 |
| TraesCS2A01G199600.1 | Wheat | extracellular | 39.86 | 17.61 |
| GSMUA_Achr9P12430_001 | Banana | extracellular | 35.81 | 17.55 |
| TraesCS7A01G244600.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 35.14 | 13.68 |
| TraesCS2A01G593600.1 | Wheat | endoplasmic reticulum, extracellular | 33.11 | 10.96 |
| CDX81022 | Canola | extracellular, plasma membrane | 33.78 | 9.88 |
| TraesCS7A01G197500.1 | Wheat | extracellular | 4.73 | 3.83 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G459300.1 | EnsemblPlantsGene:TraesCS3A01G459300 | Gene3D:3.80.10.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR001611 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt | PANTHER:PTHR44138 | PFAM:PF13516 |
| SUPFAM:SSF52058 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr3A:-:695754279..695754725
Molecular Weight (calculated)
16407.5 Da
IEP (calculated)
7.502
GRAVY (calculated)
-0.123
Length
148 amino acids
Sequence
(BLAST)
(BLAST)
001: MFLSKSPHQD VYLWLSHNNL TGPIPADFGA VNFTHLDLSR NDLTGDASGL FGRGKELQYI DLSRNTFYFD LSGVVLPERL YFVDVSHNAI QGSIPAQVAS
101: MSNLNFFNVS YNRLCGPVPA GGNMARFDLY NFQHNKCLCG APLPSCKK
101: MSNLNFFNVS YNRLCGPVPA GGNMARFDLY NFQHNKCLCG APLPSCKK
001: MDKTATLCLL FLFTFLTTCL SKDLCNQNDK NTLLKIKKSL NNPYHLASWD PQTDCCSWYC LECGDATVNH RVTALTIFSG QISGQIPAEV GDLPYLETLV
101: FRKLSNLTGT IQPTIAKLKN LRMLRLSWTN LTGPIPDFIS QLKNLEFLEL SFNDLSGSIP SSLSTLPKIL ALELSRNKLT GSIPESFGSF PGTVPDLRLS
201: HNQLSGPIPK SLGNIDFNRI DLSRNKLQGD ASMLFGSNKT TWSIDLSRNM FQFDISKVDI PKTLGILDLN HNGITGNIPV QWTEAPLQFF NVSYNKLCGH
301: IPTGGKLQTF DSYSYFHNKC LCGAPLEICK
101: FRKLSNLTGT IQPTIAKLKN LRMLRLSWTN LTGPIPDFIS QLKNLEFLEL SFNDLSGSIP SSLSTLPKIL ALELSRNKLT GSIPESFGSF PGTVPDLRLS
201: HNQLSGPIPK SLGNIDFNRI DLSRNKLQGD ASMLFGSNKT TWSIDLSRNM FQFDISKVDI PKTLGILDLN HNGITGNIPV QWTEAPLQFF NVSYNKLCGH
301: IPTGGKLQTF DSYSYFHNKC LCGAPLEICK
Arabidopsis Description
PGIP1PGIP1 [Source:UniProtKB/TrEMBL;Acc:A0A178UBN4]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.