Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 7
- vacuole 4
- plasma membrane 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G06860.1 | Thale cress | extracellular | 76.36 | 76.36 |
| Bra009238.1-P | Field mustard | extracellular | 74.55 | 74.1 |
| CDY58884 | Canola | extracellular | 71.52 | 71.3 |
| CDY58887 | Canola | extracellular | 71.21 | 71.21 |
| Bra005919.1-P | Field mustard | extracellular | 71.21 | 71.0 |
| Bra005918.1-P | Field mustard | extracellular | 43.33 | 69.76 |
| Bra005916.1-P | Field mustard | extracellular | 72.73 | 69.16 |
| CDY58888 | Canola | extracellular | 71.52 | 69.01 |
| Bra005917.1-P | Field mustard | extracellular | 71.52 | 69.01 |
| CDY58889 | Canola | extracellular | 72.12 | 68.59 |
| CDX81023 | Canola | extracellular | 70.61 | 68.13 |
| CDX98968 | Canola | endoplasmic reticulum, extracellular, vacuole | 74.55 | 63.9 |
| CDX70056 | Canola | extracellular | 74.55 | 60.74 |
| VIT_08s0007g07690.t01 | Wine grape | extracellular | 60.3 | 57.85 |
| PGSC0003DMT400057136 | Potato | extracellular | 55.76 | 56.1 |
| KRG95348 | Soybean | mitochondrion | 59.39 | 55.84 |
| Solyc07g065090.1.1 | Tomato | extracellular | 55.15 | 55.66 |
| KRH12977 | Soybean | nucleus | 54.85 | 53.39 |
| TraesCS3A01G459300.1 | Wheat | cytosol | 23.03 | 51.35 |
| GSMUA_Achr9P12430_001 | Banana | extracellular | 45.76 | 50.0 |
| KRH12976 | Soybean | cytosol | 55.76 | 49.46 |
| AT3G12145.1 | Thale cress | extracellular | 48.48 | 49.23 |
| TraesCS3A01G459200.1 | Wheat | extracellular | 47.27 | 45.88 |
| TraesCS3D01G451800.1 | Wheat | extracellular | 46.97 | 45.59 |
| TraesCS3B01G498900.1 | Wheat | extracellular | 46.36 | 45.0 |
| TraesCS3D01G451900.1 | Wheat | extracellular | 45.76 | 44.54 |
| TraesCS3D01G451500.1 | Wheat | extracellular | 44.55 | 44.01 |
| TraesCS3A01G459000.1 | Wheat | extracellular | 45.45 | 43.99 |
| TraesCS3D01G451400.1 | Wheat | extracellular | 45.15 | 43.95 |
| Zm00001d035753_P001 | Maize | extracellular | 45.15 | 43.7 |
| Os05t0104200-01 | Rice | extracellular | 40.91 | 43.69 |
| EES17528 | Sorghum | extracellular | 44.85 | 43.66 |
| HORVU3Hr1G098610.1 | Barley | extracellular | 43.94 | 43.15 |
| CDX81022 | Canola | extracellular, plasma membrane | 66.06 | 43.08 |
| HORVU3Hr1G098730.2 | Barley | endoplasmic reticulum, extracellular, mitochondrion | 46.36 | 42.86 |
| TraesCS7D01G200000.1 | Wheat | cytosol | 40.61 | 42.81 |
| EES17529 | Sorghum | extracellular | 43.94 | 42.52 |
| TraesCS1A01G012600.1 | Wheat | extracellular | 42.73 | 41.96 |
| TraesCS1D01G010800.1 | Wheat | extracellular | 42.73 | 41.84 |
| Os05t0104150-01 | Rice | extracellular | 43.03 | 41.52 |
| Zm00001d035756_P001 | Maize | vacuole | 43.33 | 40.86 |
| TraesCS1B01G017300.1 | Wheat | extracellular | 41.21 | 40.36 |
| Os05t0104600-01 | Rice | extracellular | 40.91 | 39.82 |
| TraesCS2D01G470400.1 | Wheat | extracellular | 40.3 | 38.89 |
| TraesCS7B01G103900.1 | Wheat | extracellular | 39.7 | 38.87 |
| TraesCS2A01G470500.1 | Wheat | extracellular | 39.7 | 38.3 |
| TraesCS2B01G493200.1 | Wheat | endoplasmic reticulum, extracellular | 39.39 | 38.01 |
| TraesCS2B01G493300.1 | Wheat | extracellular | 39.39 | 37.68 |
| TraesCS2D01G470500.1 | Wheat | extracellular, vacuole | 39.09 | 37.61 |
| HORVU2Hr1G106620.1 | Barley | extracellular | 38.48 | 37.35 |
| HORVU1Hr1G002410.1 | Barley | endoplasmic reticulum, vacuole | 41.52 | 37.23 |
| TraesCS2A01G470600.1 | Wheat | extracellular | 37.88 | 36.98 |
| EES17527 | Sorghum | extracellular, plastid | 43.64 | 36.64 |
| Os05t0104700-01 | Rice | extracellular | 41.52 | 34.16 |
| TraesCS7A01G197500.1 | Wheat | extracellular | 17.88 | 32.24 |
| AT3G12610.1 | Thale cress | extracellular | 34.55 | 30.65 |
| AT5G12940.1 | Thale cress | extracellular | 31.82 | 28.3 |
| AT3G20820.1 | Thale cress | extracellular | 30.61 | 27.67 |
| AT1G33600.1 | Thale cress | extracellular | 34.24 | 23.64 |
| AT2G26380.1 | Thale cress | endoplasmic reticulum, extracellular | 31.52 | 21.67 |
| AT1G33670.1 | Thale cress | extracellular | 28.18 | 20.44 |
| AT1G33612.1 | Thale cress | extracellular | 28.18 | 20.44 |
| AT1G33590.2 | Thale cress | plastid | 31.82 | 20.43 |
| AT1G33610.1 | Thale cress | extracellular, plasma membrane, vacuole | 29.09 | 20.08 |
| AT5G23400.1 | Thale cress | vacuole | 32.12 | 18.0 |
Protein Annotations
| MapMan:26.8.3.4 | Gene3D:3.80.10.10 | EntrezGene:830578 | UniProt:A0A178UDM1 | ProteinID:AED91077.1 | EMBL:AF229250 |
| ArrayExpress:AT5G06870 | EnsemblPlantsGene:AT5G06870 | RefSeq:AT5G06870 | TAIR:AT5G06870 | RefSeq:AT5G06870-TAIR-G | EnsemblPlants:AT5G06870.1 |
| TAIR:AT5G06870.1 | EMBL:AY035121 | EMBL:AY113916 | Unigene:At.20009 | ProteinID:BAB11145.1 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005618 | GO:GO:0005623 |
| GO:GO:0008150 | GO:GO:0009505 | GO:GO:0009506 | GO:GO:0016020 | GO:GO:0030234 | GO:GO:0030312 |
| GO:GO:0043086 | GO:GO:0090353 | InterPro:IPR001611 | InterPro:IPR032675 | InterPro:LRR_N_plant-typ | InterPro:LRR_dom_sf |
| InterPro:Leu-rich_rpt | RefSeq:NP_196305.1 | ProteinID:OAO91297.1 | PFAM:PF08263 | PFAM:PF13855 | Symbol:PGIP2 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PRINTS:PR00019 | PANTHER:PTHR44138 | UniProt:Q9M5J8 | SUPFAM:SSF52058 | SignalP:SignalP-noTM | UniParc:UPI00000017C7 |
| SEG:seg | : | : | : | : | : |
Description
PGIP2PGIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178UDM1]
Coordinates
chr5:+:2133918..2135168
Molecular Weight (calculated)
37069.9 Da
IEP (calculated)
9.048
GRAVY (calculated)
-0.172
Length
330 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKTMTLFLL LSTLLLTTSL AKDLCHKDDK TTLLKIKKSL NNPYHLASWD PKTDCCSWYC LECGDATVNH RVTSLIIQDG EISGQIPPEV GDLPYLTSLI
101: FRKLTNLTGH IQPTIAKLKN LTFLRLSWTN LTGPVPEFLS QLKNLEYIDL SFNDLSGSIP SSLSSLRKLE YLELSRNKLT GPIPESFGTF SGKVPSLFLS
201: HNQLSGTIPK SLGNPDFYRI DLSRNKLQGD ASILFGAKKT TWIVDISRNM FQFDLSKVKL AKTLNNLDMN HNGITGSIPA EWSKAYFQLL NVSYNRLCGR
301: IPKGEYIQRF DSYSFFHNKC LCGAPLPSCK
101: FRKLTNLTGH IQPTIAKLKN LTFLRLSWTN LTGPVPEFLS QLKNLEYIDL SFNDLSGSIP SSLSSLRKLE YLELSRNKLT GPIPESFGTF SGKVPSLFLS
201: HNQLSGTIPK SLGNPDFYRI DLSRNKLQGD ASILFGAKKT TWIVDISRNM FQFDLSKVKL AKTLNNLDMN HNGITGSIPA EWSKAYFQLL NVSYNRLCGR
301: IPKGEYIQRF DSYSFFHNKC LCGAPLPSCK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.