Factsheet for TraesCS1A01G012600.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G010800.1	Wheat	extracellular	95.54	95.25
TraesCS1B01G017300.1	Wheat	extracellular	90.48	90.21
HORVU1Hr1G002410.1	Barley	endoplasmic reticulum, vacuole	91.37	83.42
Zm00001d035756_P001	Maize	vacuole	65.77	63.14
TraesCS3A01G459300.1	Wheat	cytosol	27.08	61.49
Os05t0104150-01	Rice	extracellular	61.01	59.94
TraesCS3A01G459200.1	Wheat	extracellular	60.12	59.41
TraesCS3A01G459000.1	Wheat	extracellular	56.85	56.01
EES17527	Sorghum	extracellular, plastid	65.48	55.98
TraesCS2A01G470500.1	Wheat	extracellular	48.81	47.95
KRG95348	Soybean	mitochondrion	47.92	45.87
Bra005918.1-P	Field mustard	extracellular	27.68	45.37
TraesCS2A01G470600.1	Wheat	extracellular	44.94	44.67
Bra009234.1-P	Field mustard	extracellular	43.75	44.41
CDX70060	Canola	extracellular	43.75	44.28
CDY58887	Canola	extracellular	42.86	43.64
CDY58884	Canola	extracellular	42.86	43.5
Bra009237.1-P	Field mustard	extracellular	43.45	43.45
CDX70057	Canola	extracellular	43.45	43.45
CDX70058	Canola	extracellular	43.15	43.41
GSMUA_Achr9P12430_001	Banana	extracellular	38.99	43.38
CDX98965	Canola	extracellular	42.86	43.37
Bra005919.1-P	Field mustard	extracellular	42.56	43.2
CDX98966	Canola	extracellular	42.86	43.11
Bra009236.1-P	Field mustard	extracellular	42.86	43.11
CDX98967	Canola	extracellular	42.86	42.86
CDX70059	Canola	extracellular	42.56	42.81
AT5G06870.1	Thale cress	extracellular	41.96	42.73
Bra009235.1-P	Field mustard	extracellular	42.26	42.52
AT5G06860.1	Thale cress	extracellular	41.67	42.42
CDX81023	Canola	extracellular	43.15	42.4
CDY58888	Canola	extracellular	42.56	41.81
Bra005917.1-P	Field mustard	extracellular	42.56	41.81
TraesCS7A01G197500.1	Wheat	extracellular	22.62	41.53
PGSC0003DMT400021883	Potato	extracellular	41.07	41.32
Bra009238.1-P	Field mustard	extracellular	40.77	41.27
VIT_13s0064g01370.t01	Wine grape	extracellular	40.18	40.66
Solyc09g014590.2.1	Tomato	extracellular	37.5	40.38
TraesCS2A01G199600.1	Wheat	extracellular	39.88	40.0
Bra005916.1-P	Field mustard	extracellular	41.07	39.77
Solyc09g014480.1.1	Tomato	extracellular	39.58	39.7
KRH12976	Soybean	cytosol	43.75	39.52
KRH12977	Soybean	nucleus	39.58	39.23
CDY58889	Canola	extracellular	40.48	39.19
TraesCS7A01G189800.1	Wheat	endoplasmic reticulum, extracellular	31.25	37.23
TraesCS5A01G266200.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	34.52	36.59
CDX98968	Canola	endoplasmic reticulum, extracellular, vacuole	41.37	36.1
CDX70056	Canola	extracellular	40.77	33.83
TraesCS7A01G244600.1	Wheat	endoplasmic reticulum, extracellular, vacuole	31.25	27.63
TraesCS2A01G593600.1	Wheat	endoplasmic reticulum, extracellular	33.93	25.5
CDX81022	Canola	extracellular, plasma membrane	36.01	23.91

Protein Annotations

EnsemblPlants:TraesCS1A01G012600.1	EnsemblPlantsGene:TraesCS1A01G012600	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	PANTHER:PTHR44138
PFAM:PF00560	PFAM:PF08263	SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF52058	MapMan:26.8.3.4

Description

No Description!

Coordinates

chr1A:+:7185497..7186507

Molecular Weight (calculated)

35742.4 Da

IEP (calculated)

4.844

GRAVY (calculated)

0.215

Length

336 amino acids

Sequence
(BLAST)

001: MAGASPILLL SFLLVSMAVA DQCHDDDHAA LVAIDIAMGS PYHFASWTPD SACCDWYDVD CDADTGRVVG LRVYQDSNMS GAIPDAIGNL TFLETLTLHH
101: LPAISGVIPD SLATLSNLSE LTISYTGVSG PVPSFLSTLT ALTLLDLSYN SLTGAIPPSL ANLISLSSIN LRRNSLSGTI PSLLLSKSPD GAYLQLSHNN
201: LSGAIPTEFA AVNFSYVDLS RNALSGDATS LFGAEKVIQH LDVSRNALNF DLSAVEFPEQ LTYADLSHNA IRGSIPAQVA TLAGLQQFNV SFNRLCGAVP
301: TGGNMSRFDR YSYLHNKCLC GTPLTACRQR PVGYLH

Best Arabidopsis Sequence Match ( AT5G06870.1 )
(BLAST)

001: MDKTMTLFLL LSTLLLTTSL AKDLCHKDDK TTLLKIKKSL NNPYHLASWD PKTDCCSWYC LECGDATVNH RVTSLIIQDG EISGQIPPEV GDLPYLTSLI
101: FRKLTNLTGH IQPTIAKLKN LTFLRLSWTN LTGPVPEFLS QLKNLEYIDL SFNDLSGSIP SSLSSLRKLE YLELSRNKLT GPIPESFGTF SGKVPSLFLS
201: HNQLSGTIPK SLGNPDFYRI DLSRNKLQGD ASILFGAKKT TWIVDISRNM FQFDLSKVKL AKTLNNLDMN HNGITGSIPA EWSKAYFQLL NVSYNRLCGR
301: IPKGEYIQRF DSYSFFHNKC LCGAPLPSCK

Arabidopsis Description

PGIP2PGIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178UDM1]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.