Factsheet for Solyc09g014480.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
extracellular 7
golgi 4
plasma membrane 4
endoplasmic reticulum 5
vacuole 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400021883	Potato	extracellular	87.46	87.72
Solyc09g014590.2.1	Tomato	extracellular	68.36	73.4
Solyc07g065090.1.1	Tomato	extracellular	52.54	53.82
TraesCS3A01G459300.1	Wheat	cytosol	20.6	46.62
GSMUA_Achr9P12430_001	Banana	extracellular	41.19	45.7
VIT_13s0064g01370.t01	Wine grape	extracellular	44.48	44.88
TraesCS3A01G459200.1	Wheat	extracellular	43.88	43.24
TraesCS3D01G451800.1	Wheat	extracellular	43.88	43.24
EES17529	Sorghum	extracellular	42.99	42.23
TraesCS3D01G451900.1	Wheat	extracellular	42.69	42.18
HORVU2Hr1G106620.1	Barley	extracellular	42.69	42.06
HORVU3Hr1G098610.1	Barley	extracellular	42.09	41.96
TraesCS3B01G498900.1	Wheat	extracellular	42.39	41.76
Zm00001d035753_P001	Maize	extracellular	42.39	41.64
TraesCS3D01G451400.1	Wheat	extracellular	42.09	41.59
TraesCS2B01G493200.1	Wheat	endoplasmic reticulum, extracellular	42.39	41.52
Os05t0104200-01	Rice	extracellular	38.21	41.42
TraesCS2D01G470500.1	Wheat	extracellular, vacuole	42.39	41.4
EES17528	Sorghum	extracellular	41.79	41.3
TraesCS3A01G459000.1	Wheat	extracellular	41.79	41.06
TraesCS3D01G451500.1	Wheat	extracellular	40.9	41.02
HORVU3Hr1G098730.2	Barley	endoplasmic reticulum, extracellular, mitochondrion	43.58	40.9
TraesCS2A01G470600.1	Wheat	extracellular	41.19	40.83
Os05t0104150-01	Rice	extracellular	40.6	39.77
TraesCS2D01G470400.1	Wheat	extracellular	40.6	39.77
TraesCS1A01G012600.1	Wheat	extracellular	39.7	39.58
TraesCS1D01G010800.1	Wheat	extracellular	39.7	39.47
TraesCS7D01G200000.1	Wheat	cytosol	36.72	39.3
TraesCS2A01G470500.1	Wheat	extracellular	40.0	39.18
TraesCS7B01G103900.1	Wheat	extracellular	39.1	38.87
TraesCS2B01G493300.1	Wheat	extracellular	40.0	38.84
TraesCS1B01G017300.1	Wheat	extracellular	38.81	38.58
Zm00001d035756_P001	Maize	vacuole	40.3	38.57
Os05t0104600-01	Rice	extracellular	37.91	37.46
HORVU1Hr1G002410.1	Barley	endoplasmic reticulum, vacuole	39.7	36.14
EES17527	Sorghum	extracellular, plastid	40.6	34.61
Solyc11g056680.1.1	Tomato	extracellular	34.33	31.59
Os05t0104700-01	Rice	extracellular	37.31	31.17
TraesCS7A01G197500.1	Wheat	extracellular	15.22	27.87
Solyc01g086920.2.1	Tomato	nucleus	13.43	27.44
Solyc10g052880.1.1	Tomato	extracellular	32.24	22.59
Solyc01g011050.2.1	Tomato	endoplasmic reticulum, extracellular, vacuole	20.9	20.0
Solyc04g008830.1.1	Tomato	nucleus	31.64	17.88
Solyc05g006670.1.1	Tomato	extracellular	31.64	16.67

Protein Annotations

MapMan:26.8.3.4	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611
InterPro:IPR032675	UniProt:K4CRS5	InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	PFAM:PF00560
PFAM:PF08263	PFAM:PF13855	PFscan:PS51450	PANTHER:PTHR44138	SUPFAM:SSF52058	SignalP:SignalP-noTM
EnsemblPlantsGene:Solyc09g014480.1	EnsemblPlants:Solyc09g014480.1.1	UniParc:UPI000276B914	SEG:seg	:	:

Description

No Description!

Coordinates

chr9:-:6096749..6097756

Molecular Weight (calculated)

37922.0 Da

IEP (calculated)

8.829

GRAVY (calculated)

-0.173

Length

335 amino acids

Sequence
(BLAST)

001: MKPSSIVSIL SFSLFFLSQI SPSLSAERCH PNDKKALLEF KKALGNPDDL GNWNPKTDCC IDWYGPTLEC DEKSNRINLI DFSKMNLSGY LSPAIGDLTY
101: LTKFSIHNVR NLTGPIPSTI VKLTNLIFFR ISESDISGPV PEVLSRLKSL TYINLSYNKL VGTIPASLSQ LPYLEFLRLD RNKLTGPIPE SFGKLAPNLT
201: YLYLGHNQLT GIVPTSFAGW SFDTIDLSRN MLEGDISFLF GKDKTTYEML LDRNKFEFDM SKLTFGKGLW RLELSHNKIY GSIPKIISKN PWQILNVSYN
301: RLCGKIPKGE NMQKFEIYEY FHNKCLCGAP LPPCK

Best Arabidopsis Sequence Match ( AT5G06870.1 )
(BLAST)

001: MDKTMTLFLL LSTLLLTTSL AKDLCHKDDK TTLLKIKKSL NNPYHLASWD PKTDCCSWYC LECGDATVNH RVTSLIIQDG EISGQIPPEV GDLPYLTSLI
101: FRKLTNLTGH IQPTIAKLKN LTFLRLSWTN LTGPVPEFLS QLKNLEYIDL SFNDLSGSIP SSLSSLRKLE YLELSRNKLT GPIPESFGTF SGKVPSLFLS
201: HNQLSGTIPK SLGNPDFYRI DLSRNKLQGD ASILFGAKKT TWIVDISRNM FQFDLSKVKL AKTLNNLDMN HNGITGSIPA EWSKAYFQLL NVSYNRLCGR
301: IPKGEYIQRF DSYSFFHNKC LCGAPLPSCK

Arabidopsis Description

PGIP2PGIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178UDM1]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.