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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • extracellular 7
  • endoplasmic reticulum 4
  • vacuole 4
  • plasma membrane 4
  • golgi 4
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:nucleus, secretory
BaCelLo:nucleus
EpiLoc:nucleus
iPSORT:secretory
MultiLoc:extracellular
Plant-mPloc:extracellular, nucleus
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:nucleus
YLoc:extracellular
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400065091 Potato extracellular 93.93 93.93
VIT_10s0071g00860.t01 Wine grape extracellular, vacuole 65.09 65.31
KRH36172 Soybean nucleus 61.55 60.93
Bra026499.1-P Field mustard plastid 50.42 60.4
KRG90583 Soybean extracellular 56.16 60.22
CDY16850 Canola plastid 50.25 60.2
CDY64876 Canola extracellular, vacuole 57.17 58.15
CDX80361 Canola extracellular, vacuole 57.0 57.58
CDX88024 Canola extracellular, vacuole 56.66 57.24
Bra009680.1-P Field mustard extracellular, vacuole 56.49 57.07
AT5G23400.1 Thale cress vacuole 56.16 56.54
GSMUA_Achr1P06920_001 Banana plastid 20.91 55.11
Os04t0677200-01 Rice cytosol, peroxisome 37.94 51.49
TraesCS2D01G561100.1 Wheat extracellular 37.77 50.56
TraesCS2B01G590900.1 Wheat extracellular 37.1 49.22
TraesCS2A01G593600.1 Wheat endoplasmic reticulum, extracellular 37.1 49.22
Zm00001d026617_P001 Maize extracellular 40.81 46.9
KXG27431 Sorghum vacuole 40.64 45.99
HORVU2Hr1G119550.1 Barley cytosol 22.6 38.18
Solyc11g056680.1.1 Tomato extracellular 22.77 37.09
Solyc10g052880.1.1 Tomato extracellular 29.01 35.98
Solyc01g086920.2.1 Tomato nucleus 9.95 35.98
Solyc07g065090.1.1 Tomato extracellular 19.56 35.47
Solyc01g011050.2.1 Tomato endoplasmic reticulum, extracellular, vacuole 19.06 32.29
Solyc05g006670.1.1 Tomato extracellular 34.06 31.76
Solyc09g014480.1.1 Tomato extracellular 17.88 31.64
Solyc09g014590.2.1 Tomato extracellular 16.36 31.09
Protein Annotations
Gene3D:3.80.10.10MapMan:35.1GO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0005575
GO:GO:0005618GO:GO:0005623GO:GO:0009506GO:GO:0030312InterPro:IPR001611InterPro:IPR032675
UniProt:K4BP39InterPro:LRR_N_plant-typInterPro:LRR_dom_sfInterPro:Leu-rich_rptInterPro:Leu-rich_rpt_typical-subtypPFAM:PF08263
PFAM:PF13516PFAM:PF13855PRINTS:PR00019PANTHER:PTHR43887SMART:SM00365SMART:SM00369
SUPFAM:SSF52058SignalP:SignalP-noTMEnsemblPlantsGene:Solyc04g008830.1EnsemblPlants:Solyc04g008830.1.1UniParc:UPI0002767325:
Description
No Description!
Coordinates
chr4:-:2438053..2439834
Molecular Weight (calculated)
64343.2 Da
IEP (calculated)
8.690
GRAVY (calculated)
0.064
Length
593 amino acids
Sequence
(BLAST)
001: MHFQMLVFKI LLISSFFHQM SLAQQPQICV ETDRLALVGF KDHIFKDTTG FLSSWTGKDC CGGGWEGVEC DVSTGRVNRL VLQTPSESDI SVYMKGTLSS
101: SLGDLVFLET LIVSGMKHIA GAIPESFSKL SRLKQLILDD NSLQGDIPSG LSHLESLQTL SLSGNHLTGQ IPSVLGNFKN LQQLSLADNM LTGVIPIGVK
201: NLAALQSLDL SHNLLSGVVP NFLGQLRNLT YIDLSSNELS GEVPVSLCGL IKLSFLSMDH NRITGRIPSQ IGKMKALTSL SLSFNKLTGQ IPESIAGLPN
301: LWNLSLSRNE LFDPLPIAFS KGVPSLLSID LSYNKFNLGV VPEWIRTREL SDVNLAGCKL RGMLPNFTRP DSLNSIDLSD NAFTGGISSF FARMLSLQKG
401: KISNNQLKSD VAVIKLPDGI SSLDLHSNQL FGSLSRMLSN KTSKFLEAID VSNNQLSGSI PEFVSGLNLK VLNIGSNKIS GQIPTSISNL DKLERFDISR
501: NQITGTIPVS LGSLVKLQWL DLSINRLSGK IPDSLLGIEA LKHANFRANR LCGEIPQGRP YNIFPAAAYA HNLCLCAKPL PPCKGTKQGK LGQ
Best Arabidopsis Sequence Match ( AT5G23400.1 )
(BLAST)
001: MQNLKWVLMN LLFVSALVRN FVLSSSQQVI CSSQDRATLL GFKSSIIEDT TGVLDSWVGK DCCNGDWEGV QCNPATGKVT GLVLQSAVNE PTLYMKGTLS
101: PSLGNLRSLE LLLITGNKFI TGSIPNSFSN LTSLRQLILD DNSLQGNVLS SLGHLPLLEI LSLAGNRFSG LVPASFGSLR RLTTMNLARN SFSGPIPVTF
201: KNLLKLENLD LSSNLLSGPI PDFIGQFQNL TNLYLSSNRF SGVLPVSVYS LRKLQTMSLE RNGLTGPLSD RFSYLKSLTS LQLSGNKFIG HIPASITGLQ
301: NLWSLNLSRN LFSDPLPVVG ARGFPSLLSI DLSYNNLNLG AIPSWIRDKQ LSDINLAGCK LRGTFPKLTR PTTLTSLDLS DNFLTGDVSA FLTSLTNVQK
401: VKLSKNQLRF DLSKLKLPEG VASIDLSSNL VTGSLSSLIN NKTSSFLEEI HLTNNQISGR IPDFGESLNL KVLNIGSNKI SGQIPSSISN LVELVRLDIS
501: RNHITGGIPQ AIGQLAQLKW LDLSINALTG RIPDSLLNIK TIKHASFRAN RLCGQIPQGR PFNIFPAAAY LHNLCLCGKP LPACRKTMK
Arabidopsis Description
Disease resistance protein-like [Source:UniProtKB/TrEMBL;Acc:Q9FHL8]
SUBAcon: [vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.