Factsheet for Solyc10g052880.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	plasma membrane

plastid: 20363867
extracellular: 22364583
plastid: 22908117
extracellular: 26583031
nucleus: 28394025
extracellular: 28847647

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 26583031 doi

F Gawehns, L Ma, O Bruning, PM Houterman, S Boeren, BJ Cornelissen, M Rep, FL Takken

Laboratory of Biochemistry, Wageningen University Wageningen, Netherlands., Molecular Plant Pathology, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands., RNA Biology and Applied Bioinformatics Research Group and MAD: Dutch Genomics Service and Support Provider, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands.

msms PMID: 28847647 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA. Electronic address: jabadia@eead.csic.es.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400043544	Potato	extracellular	94.35	94.35
CDX93758	Canola	plastid	37.03	68.87
Bra028006.1-P	Field mustard	endoplasmic reticulum, vacuole	61.51	61.38
KRH56366	Soybean	nucleus	62.34	60.94
CDY40923	Canola	extracellular, vacuole	58.79	59.91
CDY15279	Canola	plastid	51.88	58.22
AT1G33590.2	Thale cress	plastid	61.3	57.0
AT2G26380.1	Thale cress	endoplasmic reticulum, extracellular	55.65	55.42
AT1G33670.1	Thale cress	extracellular	52.51	55.16
AT1G33600.1	Thale cress	extracellular	54.81	54.81
Bra016239.1-P	Field mustard	cytosol	29.5	54.65
AT1G33610.1	Thale cress	extracellular, plasma membrane, vacuole	53.97	53.97
AT1G33612.1	Thale cress	extracellular	51.26	53.85
Bra010209.1-P	Field mustard	extracellular	52.72	52.72
CDY38783	Canola	extracellular	44.35	51.71
CDX93759	Canola	endoplasmic reticulum, extracellular, vacuole	17.15	50.31
CDY11623	Canola	extracellular	43.51	49.76
Solyc11g056680.1.1	Tomato	extracellular	26.15	34.34
VIT_18s0089g00010.t01	Wine grape	plasma membrane	67.15	33.61
Solyc07g065090.1.1	Tomato	extracellular	22.8	33.33
Solyc01g011050.2.1	Tomato	endoplasmic reticulum, extracellular, vacuole	24.06	32.86
Solyc09g014480.1.1	Tomato	extracellular	22.59	32.24
Solyc01g086920.2.1	Tomato	nucleus	10.46	30.49
Solyc09g014590.2.1	Tomato	extracellular	19.67	30.13
Solyc04g008830.1.1	Tomato	nucleus	35.98	29.01
Solyc05g006670.1.1	Tomato	extracellular	34.52	25.94

Protein Annotations

EnsemblPlants:Solyc10g052880.1.1	EnsemblPlantsGene:Solyc10g052880.1	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp
PANTHER:PTHR45271	PFAM:PF08263	PFAM:PF13855	SEG:seg	SignalP:SignalP-noTM	SMART:SM00369
SUPFAM:SSF52058	UniParc:UPI000276A881	UniProt:K4D0Y5	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr10:+:54090763..54092199

Molecular Weight (calculated)

52569.9 Da

IEP (calculated)

9.582

GRAVY (calculated)

-0.006

Length

478 amino acids

Sequence
(BLAST)

001: MLCFSQFPIP LFFFLSILLI LQHHCLANCH VDDETGLLGF KSGIKSDPSG LLSSWKSGTD CCKWSGISCG ENNRVTSLSI DGQPGKNQVL SGTISPSLSK
101: LKMLTSISLT NLKNLAGTPN FLLSFPNIQI VYLENNNLSG QISPKIGNLT QLFALSFLGN KLTGPIPSSI GQLTQLSQLK LGDNLLTGTI PNTFDKLKGL
201: TYLSLEKNQL SGSIPNFFNS LSNLRILTLS HNKFTGNFPS SITTLAPILR FLEVGHNYLS GKIPDFLGKF RSLDTLDLSY NKFSGTVPKT FANLTKIFNL
301: NLSHNLLVDP FPALFVKGIE SLDLSYNNFH LNTIPSWVTS SPIIYSLKLA KCGIKIKLDD WNPKTTYFYD YIDLSDNDIT GSPIGLLNKT DFLIGFYAAG
401: NKLKFDLEKM KIVKTLKELD LSRNMVYGEV PKEISGLNKL NLSNNHLSGQ LPPTKFKANS FAGNKGLCGS PLPPCRKF

Best Arabidopsis Sequence Match ( AT1G33590.3 )
(BLAST)

001: MDWSKTSTLT SQLSSNLFPT TNSSLLSINT TQFTTMNSSF TLFIFTFVIF LQCLNPTGAA TCHPDDEAGL LAFKAGITRD PSGILSSWKK GTACCSWNGV
101: TCLTTDRVSA LSVAGQADVA GSFLSGTLSP SLAKLKHLDG IYFTDLKNIT GSFPQFLFQL PNLKYVYIEN NRLSGTLPAN IGALSQLEAF SLEGNRFTGP
201: IPSSISNLTL LTQLKLGNNL LTGTIPLGVA NLKLMSYLNL GGNRLTGTIP DIFKSMPELR SLTLSRNGFS GNLPPSIASL APILRFLELG HNKLSGTIPN
301: FLSNFKALDT LDLSKNRFSG VIPKSFANLT KIFNLDLSHN LLTDPFPVLN VKGIESLDLS YNQFHLNTIP KWVTSSPIIF SLKLAKCGIK MSLDDWKPAQ
401: TFYYDFIDLS ENEITGSPAR FLNQTEYLVE FKAAGNKLRF DMGKLTFAKT LTTLDISRNL VFGKVPAMVA GLKTLNVSHN HLCGKLPVTK FPASAFVGND
501: CLCGSPLSPC KA

Arabidopsis Description

Leucine-rich repeat (LRR) family protein [Source:TAIR;Acc:AT1G33590]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.