CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
extracellular 7
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	plasma membrane

nucleus: 21132161
mitochondrion: 25806999
nucleus: 27291164

msms PMID: 25806999 doi

AH Kamal, S Komatsu

National Institute of Crop Science, National Agriculture and Food Research Organization, Kannondai 2-1-18, Tsukuba 305-8518, Japan.

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56365	Soybean	cytosol	31.08	92.12
CDX93758	Canola	plastid	37.01	70.43
PGSC0003DMT400043544	Potato	extracellular	61.76	63.18
Solyc10g052880.1.1	Tomato	extracellular	60.94	62.34
Bra028006.1-P	Field mustard	endoplasmic reticulum, vacuole	60.74	62.0
CDY40923	Canola	extracellular, vacuole	58.9	61.41
CDY15279	Canola	plastid	52.76	60.56
AT1G33590.2	Thale cress	plastid	62.17	59.14
AT2G26380.1	Thale cress	endoplasmic reticulum, extracellular	56.03	57.08
AT1G33600.1	Thale cress	extracellular	55.21	56.49
AT1G33670.1	Thale cress	extracellular	51.74	55.6
Bra016239.1-P	Field mustard	cytosol	29.04	55.04
AT1G33612.1	Thale cress	extracellular	50.31	54.07
AT1G33610.1	Thale cress	extracellular, plasma membrane, vacuole	52.56	53.77
Bra010209.1-P	Field mustard	extracellular	51.74	52.93
CDY38783	Canola	extracellular	43.97	52.44
CDY11623	Canola	extracellular	43.76	51.2
CDX93759	Canola	endoplasmic reticulum, extracellular, vacuole	16.16	48.47
KRH24680	Soybean	extracellular	25.77	34.52
KRH27500	Soybean	endoplasmic reticulum, extracellular	25.15	33.7
KRH23157	Soybean	nucleus	25.36	33.7
VIT_18s0089g00010.t01	Wine grape	plasma membrane	65.24	33.4
KRH20845	Soybean	endoplasmic reticulum	24.74	33.06
KRH29680	Soybean	endoplasmic reticulum	25.36	32.04
KRH43480	Soybean	nucleus	23.31	31.84
KRH58374	Soybean	endoplasmic reticulum	21.47	31.34
KRH58377	Soybean	endoplasmic reticulum	21.27	31.14
KRH42256	Soybean	endoplasmic reticulum	21.27	30.95
KRH42258	Soybean	extracellular	20.86	30.72
KRH42259	Soybean	extracellular	20.86	30.63
KRH24681	Soybean	extracellular	22.09	30.42
KRG95348	Soybean	mitochondrion	21.47	29.91
KRH12977	Soybean	nucleus	20.65	29.79
KRH58376	Soybean	endoplasmic reticulum	20.45	29.76
KRH12883	Soybean	cytosol	9.41	28.93
KRH36172	Soybean	nucleus	34.97	28.55
KRG90583	Soybean	extracellular	31.7	28.03
KRH12976	Soybean	cytosol	21.27	27.96
KRH08128	Soybean	cytosol	34.15	27.24
KRH74736	Soybean	endoplasmic reticulum, extracellular, plasma membrane	34.76	26.65
KRH42255	Soybean	cytosol, extracellular, mitochondrion, plastid	7.57	26.24
KRG91824	Soybean	extracellular	12.68	25.83
KRH45818	Soybean	plasma membrane	33.95	25.78
KRH58375	Soybean	extracellular, plastid	12.07	25.0

Protein Annotations

EntrezGene:100305447	Gene3D:3.80.10.10	MapMan:35.1	EMBL:ACUP02004114	UniProt:C6ZS00	EMBL:FJ014841
EnsemblPlantsGene:GLYMA_06G319700	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611	InterPro:IPR032675
EnsemblPlants:KRH56366	ProteinID:KRH56366	ProteinID:KRH56366.1	InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt
InterPro:Leu-rich_rpt_typical-subtyp	PFAM:PF00560	PFAM:PF08263	PFAM:PF13855	PANTHER:PTHR45271	SMART:SM00369
SUPFAM:SSF52058	SignalP:SignalP-TM	TMHMM:TMhelix	UniParc:UPI0001B06D4B	SEG:seg	:

Description

hypothetical protein

Coordinates

chr6:+:50855930..50857997

Molecular Weight (calculated)

53835.0 Da

IEP (calculated)

8.602

GRAVY (calculated)

0.038

Length

489 amino acids

Sequence
(BLAST)

001: MNLYHSSTTT TTTTIFTVIF LLLAILFTLT PHKANGATCH PEEEAGLLGF KSGIRSDPSG LLSNWISGTD CCTWTGVECH YNSTRVQRLF LTGQKPETIL
101: SGTISPTLSK LKLLDGLYLI NLINISGPFP NFLFQLPNLQ FIYLENNNLS GRIPDNIGNL TRLDVLSLTG NRFIGPVPSS ITKLTQLTQL KLGNNFLTGT
201: VPQGIAKLVN LTYLSLEGNQ LEGTIPDFFS SFTDLRILNF SYNKFSGNIP NSISSLAPKL TYLELGHNSL SGKIPDFLGK FKALDTLDLS WNKFSGTVPA
301: SFKNLTKIFN LNLSNNLLVD PFPEMNVKGI ESLDLSNNSF HLGSIPKWVA SSPIIFSLKL VNCGIKMRLE DFKPSETYFY DFIDLSGNEI SGSAIGLVNS
401: TEYLVGFWAS GNKLKFDLGK LRFGERFKFL DLSRNWVFGK VPNSVVGLEK LNVSYNHLCG QLPKNKFPAS AFVGNDCLCG SPLPPCNKA

Best Arabidopsis Sequence Match ( AT1G33590.2 )
(BLAST)

001: MQMDWSKTST LTSQLSSNLF PTTNSSLLSI NTTQFTTMNS SFTLFIFTFV IFLQCLNPTG AATCHPDDEA GLLAFKAGIT RDPSGILSSW KKGTACCSWN
101: GVTCLTTDRV SALSVAGQAD VAGSFLSGTL SPSLAKLKHL DGIYFTDLKN ITGSFPQFLF QLPNLKYVYI ENNRLSGTLP ANIGALSQLE AFSLEGNRFT
201: GPIPSSISNL TLLTQLKLGN NLLTGTIPLG VANLKLMSYL NLGGNRLTGT IPDIFKSMPE LRSLTLSRNG FSGNLPPSIA SLAPILRFLE LGHNKLSGTI
301: PNFLSNFKAL DTLDLSKNRF SGVIPKSFAN LTKIFNLDLS HNLLTDPFPV LNVKGIESLD LSYNQFHLNT IPKWVTSSPI IFSLKLAKCG IKMSLDDWKP
401: AQTFYYDFID LSENEITGSP ARFLNQTEYL VEFKAAGNKL RFDMGKLTFA KTLTTLDISR NLVFGKVPAM VAGLKTLNVS HNHLCGKLPV TKFPASAFVG
501: NDCLCGSPLS PCKA

Arabidopsis Description

Leucine-rich repeat (LRR) family protein [Source:TAIR;Acc:AT1G33590]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.