CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 6
vacuole 5
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

extracellular: 22945350

msms PMID: 22945350 doi

C Liao, F Hochholdinger, C Li

Key Laboratory of Plant-Soil Interactions, Ministry of Education, Center for Resources, Environment and Food Security, China Agricultural University, Beijing, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58374	Soybean	endoplasmic reticulum	70.78	70.15
KRH42259	Soybean	extracellular	69.28	69.07
KRH42256	Soybean	endoplasmic reticulum	66.27	65.48
KRH58376	Soybean	endoplasmic reticulum	64.76	63.99
KRH58377	Soybean	endoplasmic reticulum	64.16	63.77
KRH42255	Soybean	cytosol, extracellular, mitochondrion, plastid	26.2	61.7
KRH58375	Soybean	extracellular, plastid	38.55	54.24
KRG95348	Soybean	mitochondrion	51.81	49.0
KRH12977	Soybean	nucleus	47.89	46.9
KRH12976	Soybean	cytosol	46.99	41.94
KRH43480	Soybean	nucleus	31.93	29.61
KRH23157	Soybean	nucleus	32.23	29.08
KRH24680	Soybean	extracellular	31.93	29.04
KRH20845	Soybean	endoplasmic reticulum	31.93	28.96
KRH12883	Soybean	cytosol	13.55	28.3
KRH27500	Soybean	endoplasmic reticulum, extracellular	31.02	28.22
KRH24681	Soybean	extracellular	29.22	27.32
KRH29680	Soybean	endoplasmic reticulum	29.52	25.32
KRG91824	Soybean	extracellular	17.77	24.58
KRH56366	Soybean	nucleus	30.72	20.86
KRH36172	Soybean	nucleus	33.13	18.36
KRH56365	Soybean	cytosol	9.04	18.18
KRG90583	Soybean	extracellular	30.12	18.08
KRH74736	Soybean	endoplasmic reticulum, extracellular, plasma membrane	31.63	16.46
KRH08128	Soybean	cytosol	29.82	16.15
KRH45818	Soybean	plasma membrane	30.72	15.84

Protein Annotations

EMBL:ACUP02004794	EnsemblPlants:KRH42258	EnsemblPlantsGene:GLYMA_08G079100	EntrezGene:548022	Gene3D:3.80.10.10	InterPro:IPR032675
InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf	PANTHER:PTHR44138	PFAM:PF08263	ProteinID:CAI99394.1	ProteinID:KRH42258
ProteinID:KRH42258.1	SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF52058	UniParc:UPI0000DB841A	UniProt:Q0WX03
MapMan:26.8.3.4	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:6025269..6026378

Molecular Weight (calculated)

36266.9 Da

IEP (calculated)

8.546

GRAVY (calculated)

0.048

Length

332 amino acids

Sequence
(BLAST)

001: MSKLSILFLL VLSFSSVLSE LCNPQDKQAL LQIKKDLGNP TTLSSWLLTT DCCNRTWLGV SCDTDTQTYR VNDLDLSDLN LPKPYSIPPS IANLPYLNFL
101: SISRTPTLIG QIPSAIAKLT QLRYLYITHT NVSGPIPDFL SQIKTLVTLD FSYNTLSGKL PASLSSLPNL VGITFDGNQI SGAIPDSYGS FSKLFTSMTI
201: SRNRLTGKIP ATFANLNLAF VDLSRNMLEG DASVLFGTEK NTQKILLAKN MLAFDLGKVG LSKNLNGLDL RNNRIYGTLP QGLTALKFLH SFNVSFNDLC
301: GEIPQGGNMQ RFDVSSYANN KCLCGSPLPP CT

Best Arabidopsis Sequence Match ( AT5G06870.1 )
(BLAST)

001: MDKTMTLFLL LSTLLLTTSL AKDLCHKDDK TTLLKIKKSL NNPYHLASWD PKTDCCSWYC LECGDATVNH RVTSLIIQDG EISGQIPPEV GDLPYLTSLI
101: FRKLTNLTGH IQPTIAKLKN LTFLRLSWTN LTGPVPEFLS QLKNLEYIDL SFNDLSGSIP SSLSSLRKLE YLELSRNKLT GPIPESFGTF SGKVPSLFLS
201: HNQLSGTIPK SLGNPDFYRI DLSRNKLQGD ASILFGAKKT TWIVDISRNM FQFDLSKVKL AKTLNNLDMN HNGITGSIPA EWSKAYFQLL NVSYNRLCGR
301: IPKGEYIQRF DSYSFFHNKC LCGAPLPSCK

Arabidopsis Description

PGIP2PGIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178UDM1]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.