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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • nucleus 2
  • plastid 2
  • mitochondrion 4
  • extracellular 4
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:mitochondrion, nucleus, plastid, secretory
BaCelLo:nucleus
ChloroP:plastid
EpiLoc:plastid
iPSORT:mitochondrion
MultiLoc:extracellular
Plant-mPloc:extracellular, nucleus
Predotar:mitochondrion
PProwler:secretory
TargetP:mitochondrion
WoLF PSORT:mitochondrion
YLoc:extracellular
 endoplasmic reticulum: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH24680 Soybean extracellular 85.79 90.96
KRH23157 Soybean nucleus 60.72 63.86
VIT_06s0004g01750.t01 Wine grape extracellular 57.11 60.71
Solyc11g056680.1.1 Tomato extracellular 56.59 60.16
PGSC0003DMT400003166 Potato extracellular, vacuole 56.59 60.16
AT3G20820.1 Thale cress extracellular 56.33 59.73
Bra035741.1-P Field mustard extracellular 56.07 59.45
CDY19601 Canola extracellular 56.07 59.45
CDY27559 Canola extracellular 56.07 59.45
CDY60388 Canola extracellular 55.81 59.18
GSMUA_Achr10P... Banana cytosol 41.86 58.91
CDY06385 Canola extracellular 55.56 58.9
GSMUA_Achr4P01520_001 Banana cytosol 41.34 58.18
AT5G12940.1 Thale cress extracellular 54.01 56.33
CDX85681 Canola extracellular 49.61 55.65
KRH27500 Soybean endoplasmic reticulum, extracellular 52.2 55.34
CDX91155 Canola extracellular 49.1 54.91
Bra023925.1-P Field mustard extracellular 53.23 54.79
Bra023383.1-P Field mustard extracellular 49.1 54.76
KRH20845 Soybean endoplasmic reticulum 51.68 54.64
KRH43480 Soybean nucleus 49.61 53.63
KRH24681 Soybean extracellular 49.1 53.52
CDY69275 Canola extracellular 51.16 52.94
Bra008870.1-P Field mustard extracellular 50.9 52.81
CDY53975 Canola extracellular 50.39 52.28
Bra008869.1-P Field mustard extracellular, plasma membrane 50.39 52.14
CDY69775 Canola extracellular, plasma membrane 50.65 51.99
GSMUA_Achr3P03820_001 Banana endoplasmic reticulum, extracellular 49.87 51.88
CDY68308 Canola extracellular 49.87 51.6
Os08t0505900-01 Rice extracellular 46.25 47.11
Zm00001d031434_P001 Maize extracellular 45.74 46.46
TraesCS7D01G243300.1 Wheat extracellular 44.7 45.53
TraesCS7B01G146800.1 Wheat extracellular 44.7 45.53
EES14271 Sorghum cytosol 47.03 45.39
TraesCS7A01G244600.1 Wheat endoplasmic reticulum, extracellular, vacuole 44.44 45.26
HORVU7Hr1G050110.1 Barley vacuole 43.93 43.81
HORVU7Hr1G050140.1 Barley plastid 43.93 43.59
KRG91824 Soybean extracellular 26.61 42.92
KRH12883 Soybean cytosol 17.05 41.51
KRH58376 Soybean endoplasmic reticulum 26.61 30.65
KRH58374 Soybean endoplasmic reticulum 26.1 30.15
KRH58377 Soybean endoplasmic reticulum 25.58 29.64
KRH42258 Soybean extracellular 25.32 29.52
KRH42256 Soybean endoplasmic reticulum 25.06 28.87
KRG95348 Soybean mitochondrion 25.84 28.49
KRH12977 Soybean nucleus 24.81 28.32
KRH42259 Soybean extracellular 24.29 28.23
KRH12976 Soybean cytosol 25.84 26.88
KRH42255 Soybean cytosol, extracellular, mitochondrion, plastid 9.3 25.53
KRH56366 Soybean nucleus 32.04 25.36
KRH58375 Soybean extracellular, plastid 14.73 24.15
KRG90583 Soybean extracellular 30.49 21.34
KRH36172 Soybean nucleus 32.3 20.87
KRH74736 Soybean endoplasmic reticulum, extracellular, plasma membrane 31.78 19.28
KRH45818 Soybean plasma membrane 31.52 18.94
KRH08128 Soybean cytosol 29.97 18.92
KRH56365 Soybean cytosol 7.75 18.18
Protein Annotations
EntrezGene:100791273Gene3D:3.80.10.10MapMan:35.1EMBL:ACUP02006815EnsemblPlantsGene:GLYMA_11G131300GO:GO:0003674
GO:GO:0005488GO:GO:0005515UniProt:I1LJU0InterPro:IPR001611InterPro:IPR032675EnsemblPlants:KRH29680
ProteinID:KRH29680ProteinID:KRH29680.1InterPro:LRR_N_plant-typInterPro:LRR_dom_sfInterPro:Leu-rich_rptPFAM:PF00560
PFAM:PF08263PFAM:PF13855PANTHER:PTHR44401PANTHER:PTHR44401:SF2SUPFAM:SSF52058UniParc:UPI000233D287
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr11:+:10037452..10038969
Molecular Weight (calculated)
42256.9 Da
IEP (calculated)
8.726
GRAVY (calculated)
0.038
Length
387 amino acids
Sequence
(BLAST)
001: MHKSRISKFS FSLFSKPSYY NTMGRVWFTA PLTALLLLAF SSAVSSCPQS DLAALLAFKS ALRESNDGIF NTWTGTDCCH NWYGISCDRN THRVAEISLR
101: AGPVYTTFEK PFRPGYMSGS ISPEICKLTH LSSIIITDWQ GISGEIPRCI TSLFFLRIID LTGNRIAGTL PSNIGRLRHL TLLSAADNVI AGIIPPSLTN
201: VTGLMHLDLR NNRIFGPIPR SLGRLQMLSR VLLSGNHISG PIPRSFCHIY RLVDLDLSNN RLSGSIPEAL GRMKVLSTLK LDSNRLSGSI PASLLGSGIS
301: ELNLSHNYLE GNIPDSFGGS SYFTLLDLSY NNLKGPIPKS MSSSSYVGFV DFSHNHLCGP IPSSYSDADA SSFDYNDCLC GKPLKAC
Best Arabidopsis Sequence Match ( AT3G20820.1 )
(BLAST)
001: MNLNVVVLLL LLLISSATCC PPSDRRALLA FRSALHEPYL GIFNSWTGQD CCHNWYGISC DSLTHRVADI NLRGESEDPI FERAHRTGYM TGHISASICE
101: LTRLSAITIA DWKGISGEIP KCITRLPFLR TLDLIGNQIS GGIPYDIGRL NRLAVLNVAD NRISGSIPKS LTNLSSLMHL DLRNNLISGV IPSDVGRLKM
201: LSRALLSGNR ITGRIPESLT NIYRLADVDL SGNQLYGTIP PSLGRMSVLA TLNLDGNKIS GEIPQTLMTS SVMNLNLSRN LLQGKIPEGF GPRSYFTVLD
301: LSYNNLKGPI PRSISGASFI GHLDLSHNHL CGRIPVGSPF DHLEAASFMF NDCLCGKPLR ACLKN
Arabidopsis Description
Leucine-rich repeat (LRR) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LT39]
SUBAcon: [extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.