Factsheet for Bra023925.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY60388	Canola	extracellular	93.35	96.16
CDY27559	Canola	extracellular	91.22	93.97
AT3G20820.1	Thale cress	extracellular	85.9	88.49
Bra035741.1-P	Field mustard	extracellular	85.9	88.49
KRH23157	Soybean	nucleus	67.82	69.29
VIT_06s0004g01750.t01	Wine grape	extracellular	65.69	67.86
Solyc11g056680.1.1	Tomato	extracellular	64.1	66.21
PGSC0003DMT400003166	Potato	extracellular, vacuole	63.83	65.93
Bra023383.1-P	Field mustard	extracellular	56.91	61.67
Bra008869.1-P	Field mustard	extracellular, plasma membrane	60.11	60.43
Bra008870.1-P	Field mustard	extracellular	58.78	59.25
GSMUA_Achr10P...	Banana	cytosol	43.09	58.91
GSMUA_Achr4P01520_001	Banana	cytosol	43.09	58.91
KRH24680	Soybean	extracellular	54.79	56.44
GSMUA_Achr3P03820_001	Banana	endoplasmic reticulum, extracellular	55.59	56.18
Bra001460.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	55.05	55.65
Bra038737.1-P	Field mustard	endoplasmic reticulum, extracellular	54.26	54.69
KRH29680	Soybean	endoplasmic reticulum	54.79	53.23
Os08t0505900-01	Rice	extracellular	52.13	51.58
KRH24681	Soybean	extracellular	47.87	50.7
TraesCS7A01G244600.1	Wheat	endoplasmic reticulum, extracellular, vacuole	49.2	48.68
TraesCS7B01G146800.1	Wheat	extracellular	49.2	48.68
TraesCS7D01G243300.1	Wheat	extracellular	48.94	48.42
HORVU7Hr1G050110.1	Barley	vacuole	49.47	47.94
HORVU7Hr1G050140.1	Barley	plastid	49.47	47.69
Zm00001d031434_P001	Maize	extracellular	47.61	46.98
EES14271	Sorghum	cytosol	49.73	46.63
Bra034774.1-P	Field mustard	extracellular	28.72	33.13
Bra009237.1-P	Field mustard	extracellular	28.19	31.55
Bra038700.1-P	Field mustard	extracellular, vacuole	26.86	31.08
Bra005918.1-P	Field mustard	extracellular	16.76	30.73
Bra034773.1-P	Field mustard	cytosol	25.53	30.48
Bra009235.1-P	Field mustard	extracellular	26.86	30.24
Bra009236.1-P	Field mustard	extracellular	26.6	29.94
Bra005919.1-P	Field mustard	extracellular	26.33	29.91
Bra009234.1-P	Field mustard	extracellular	26.33	29.91
Bra005917.1-P	Field mustard	extracellular	26.6	29.24
Bra009238.1-P	Field mustard	extracellular	25.8	29.22
Bra005916.1-P	Field mustard	extracellular	25.27	27.38
Bra010209.1-P	Field mustard	extracellular	29.52	23.22
Bra028006.1-P	Field mustard	endoplasmic reticulum, vacuole	28.46	22.34
Bra009680.1-P	Field mustard	extracellular, vacuole	34.84	22.32
Bra026499.1-P	Field mustard	plastid	27.13	20.61
Bra016239.1-P	Field mustard	cytosol	11.97	17.44

Protein Annotations

EnsemblPlants:Bra023925.1	EnsemblPlants:Bra023925.1-P	EnsemblPlantsGene:Bra023925	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt
PANTHER:PTHR44401	PANTHER:PTHR44401:SF2	PFAM:PF08263	PFAM:PF13855	SEG:seg	SignalP:SignalP-noTM
SUPFAM:SSF52058	UniParc:UPI0002544729	UniProt:M4E571	MapMan:35.1	:	:

Description

AT3G20820 (E=5e-112) | leucine-rich repeat family protein

Coordinates

chrA01:-:21085527..21086871

Molecular Weight (calculated)

41360.3 Da

IEP (calculated)

8.735

GRAVY (calculated)

0.094

Length

376 amino acids

Sequence
(BLAST)

001: MKLNVVVSLL LLLISTATCC PPSDLRALLA FRSALHEPYL GIFNSWTGQD CCHNWYGVSC DAVTHRVADI NLRGESEDPI FERAHRTGYI TGRISPAICD
101: LARLSALTIA DWKGISGDIP KCITRLSFLR TIDLIGNQIS GEIPNDIGRL NRLAVLNVAD NRISGSIPKS LTNLSSLMHL DLRNNLITGL IPTDFGRLTM
201: LSRALLSGNR ITGRIPESLT KIYRLADVDL SIRSSISYIS FYINYAPTKK TFYIRPWSVL ATLNLDGNKI SGEIPQTLMT SSVMNLNLSR NLLQGKIPEG
301: FGPRSYFTVL DLSYNNLKGP IPSSISGASF IGHLDISHNH LCGKIPVGSP FDHLEAASFM FNDCLCGKPL RACLKH

Best Arabidopsis Sequence Match ( AT3G20820.1 )
(BLAST)

001: MNLNVVVLLL LLLISSATCC PPSDRRALLA FRSALHEPYL GIFNSWTGQD CCHNWYGISC DSLTHRVADI NLRGESEDPI FERAHRTGYM TGHISASICE
101: LTRLSAITIA DWKGISGEIP KCITRLPFLR TLDLIGNQIS GGIPYDIGRL NRLAVLNVAD NRISGSIPKS LTNLSSLMHL DLRNNLISGV IPSDVGRLKM
201: LSRALLSGNR ITGRIPESLT NIYRLADVDL SGNQLYGTIP PSLGRMSVLA TLNLDGNKIS GEIPQTLMTS SVMNLNLSRN LLQGKIPEGF GPRSYFTVLD
301: LSYNNLKGPI PRSISGASFI GHLDLSHNHL CGRIPVGSPF DHLEAASFMF NDCLCGKPLR ACLKN

Arabidopsis Description

Leucine-rich repeat (LRR) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LT39]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.