Factsheet for Bra008870.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 6
vacuole 5
plasma membrane 5
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53975	Canola	extracellular	97.32	97.32
Bra008869.1-P	Field mustard	extracellular, plasma membrane	86.33	86.1
Bra023383.1-P	Field mustard	extracellular	72.39	77.81
AT5G12940.1	Thale cress	extracellular	77.21	77.63
Bra035741.1-P	Field mustard	extracellular	62.73	64.11
VIT_06s0004g01750.t01	Wine grape	extracellular	59.79	61.26
KRH23157	Soybean	nucleus	60.32	61.14
Bra023925.1-P	Field mustard	extracellular	59.25	58.78
PGSC0003DMT400003166	Potato	extracellular, vacuole	57.1	58.52
Solyc11g056680.1.1	Tomato	extracellular	56.84	58.24
GSMUA_Achr10P...	Banana	cytosol	40.75	55.27
GSMUA_Achr4P01520_001	Banana	cytosol	40.48	54.91
KRH24680	Soybean	extracellular	53.35	54.52
Bra001460.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	53.62	53.76
Bra038737.1-P	Field mustard	endoplasmic reticulum, extracellular	52.01	52.01
KRH29680	Soybean	endoplasmic reticulum	52.81	50.9
GSMUA_Achr3P03820_001	Banana	endoplasmic reticulum, extracellular	50.4	50.54
Os08t0505900-01	Rice	extracellular	51.47	50.53
TraesCS7D01G243300.1	Wheat	extracellular	50.4	49.47
TraesCS7B01G146800.1	Wheat	extracellular	50.4	49.47
KRH24681	Soybean	extracellular	46.92	49.3
TraesCS7A01G244600.1	Wheat	endoplasmic reticulum, extracellular, vacuole	50.13	49.21
HORVU7Hr1G050110.1	Barley	vacuole	49.87	47.94
HORVU7Hr1G050140.1	Barley	plastid	49.87	47.69
Zm00001d031434_P001	Maize	extracellular	48.53	47.51
EES14271	Sorghum	cytosol	49.33	45.89
Bra034774.1-P	Field mustard	extracellular	29.22	33.44
Bra005918.1-P	Field mustard	extracellular	17.96	32.68
Bra034773.1-P	Field mustard	cytosol	26.27	31.11
Bra009235.1-P	Field mustard	extracellular	27.35	30.54
Bra009237.1-P	Field mustard	extracellular	27.35	30.36
Bra005919.1-P	Field mustard	extracellular	26.81	30.21
Bra009234.1-P	Field mustard	extracellular	26.27	29.61
Bra005917.1-P	Field mustard	extracellular	27.08	29.53
Bra009236.1-P	Field mustard	extracellular	26.01	29.04
Bra038700.1-P	Field mustard	extracellular, vacuole	25.2	28.92
Bra009238.1-P	Field mustard	extracellular	24.66	27.71
Bra005916.1-P	Field mustard	extracellular	25.74	27.67
Bra028006.1-P	Field mustard	endoplasmic reticulum, vacuole	32.71	25.47
Bra009680.1-P	Field mustard	extracellular, vacuole	35.92	22.83
Bra010209.1-P	Field mustard	extracellular	29.22	22.8
Bra026499.1-P	Field mustard	plastid	28.69	21.62
Bra016239.1-P	Field mustard	cytosol	13.67	19.77

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	EnsemblPlantsGene:Bra008870	EnsemblPlants:Bra008870.1	EnsemblPlants:Bra008870.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt	UniProt:M4CXC3	PFAM:PF00560	PFAM:PF08263	PFAM:PF13855	PFscan:PS51257
PANTHER:PTHR44401	PANTHER:PTHR44401:SF2	SUPFAM:SSF52058	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0002543B5E

Description

AT5G12940 (E=2e-166) | leucine-rich repeat family protein

Coordinates

chrA10:-:14212177..14213298

Molecular Weight (calculated)

39941.2 Da

IEP (calculated)

10.324

GRAVY (calculated)

0.163

Length

373 amino acids

Sequence
(BLAST)

001: MDAKNALVIV LTSIAVLLLA GAPTVVQACL PSERAALLEF RAKLNEPYIG VFKTWKGQDC CNGWYGVSCD PKSRRVSGIT LRGVSEEPIF QRAKRKGFMT
101: GTISPALCKL THLSGVTITD WEGISGVIPN CITNLLAMRH LDLAGNKISG VIPANIGKLT KLRVLNLADN KISGVIPPSI TRLTSLSHLD LRNNYISGVI
201: PGDIGRLKML SRVLLTGNRI SGQIPESLPR IYRLADLELG MNRMTGTIPV SLGKMSVLAT LDLHGNLISG AIPGSLMTSS ISNLNLRGNR LAGRIPNTFG
301: PRSYFTVLDL SNNRLLGAIP ASITTASFIG HIDVSHNQLC GKIPTGSHFG HLEAASFAYN RCLCGKPLGN CPK

Best Arabidopsis Sequence Match ( AT5G12940.1 )
(BLAST)

001: MDTKKSLVIL LTNVVVFLLL STTVHSCLPS DRAALLEFRA KLNEPYIGVF NTWKGLDCCK GWYGVSCDPN TRRVAGITLR GESEDPLFQK AKRSGLMTGS
101: ISPSICKLTR LSGIIIADWK GISGVIPSCI ENLPFLRHLD LVGNKFSGVI PANIGKLLRL KVLNLADNHL YGVIPPSITR LVSLSHLDLR NNNISGVIPR
201: DIGRLKMVSR VLLSGNKISG QIPDSLTRIY RLADLELSMN RLTGPIPASF GKMSVLATLN LDGNLISGMI PGSLLASSIS NLNLSGNLIT GSIPNTFGPR
301: SYFTVLDLAN NRLQGPIPAS ITAASFIGHL DVSHNHLCGK IPMGSPFDHL DATSFAYNAC LCGKPLGNCK K

Arabidopsis Description

Leucine-rich repeat (LRR) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LXU5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.