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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • extracellular 8
  • endoplasmic reticulum 5
  • vacuole 6
  • plasma membrane 5
  • golgi 5
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:plastid, secretory
BaCelLo:secretory
EpiLoc:plastid
iPSORT:secretory
MultiLoc:extracellular
Plant-mPloc:extracellular
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:vacuole
YLoc:extracellular
 nucleus: 21132161
mitochondrion: 25806999
endoplasmic reticulum: 27224218
nucleus: 27291164
nucleus: 28499913
msms PMID: 25806999 doi
AH Kamal, S Komatsu
National Institute of Crop Science, National Agriculture and Food Research Organization, Kannondai 2-1-18, Tsukuba 305-8518, Japan.
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27291164 doi
X Yin, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
VIT_06s0004g01750.t01 Wine grape extracellular 74.73 75.55
Bra035741.1-P Field mustard extracellular 74.46 75.07
CDY19601 Canola extracellular 74.46 75.07
CDY06385 Canola extracellular 73.91 74.52
AT3G20820.1 Thale cress extracellular 72.01 72.6
CDY27559 Canola extracellular 72.01 72.6
CDY60388 Canola extracellular 72.01 72.6
PGSC0003DMT400003166 Potato extracellular, vacuole 71.47 72.25
Solyc11g056680.1.1 Tomato extracellular 71.47 72.25
GSMUA_Achr10P... Banana cytosol 51.09 68.36
Bra023925.1-P Field mustard extracellular 69.29 67.82
GSMUA_Achr4P01520_001 Banana cytosol 49.73 66.55
KRH43480 Soybean nucleus 63.04 64.8
KRH24680 Soybean extracellular 63.86 64.38
AT5G12940.1 Thale cress extracellular 64.67 64.15
CDX85681 Canola extracellular 58.7 62.61
Bra023383.1-P Field mustard extracellular 58.97 62.54
CDX91155 Canola extracellular 58.7 62.43
Bra008869.1-P Field mustard extracellular, plasma membrane 62.77 61.76
GSMUA_Achr3P03820_001 Banana endoplasmic reticulum, extracellular 61.41 60.75
KRH29680 Soybean endoplasmic reticulum 63.86 60.72
CDY68308 Canola extracellular 61.68 60.7
CDY69775 Canola extracellular, plasma membrane 61.96 60.48
Bra008870.1-P Field mustard extracellular 61.14 60.32
CDY53975 Canola extracellular 60.6 59.79
CDY69275 Canola extracellular 60.6 59.63
KRH20845 Soybean endoplasmic reticulum 58.97 59.29
KRH27500 Soybean endoplasmic reticulum, extracellular 58.7 59.18
KRH24681 Soybean extracellular 54.62 56.62
Os08t0505900-01 Rice extracellular 58.15 56.32
TraesCS7B01G146800.1 Wheat extracellular 56.25 54.47
TraesCS7D01G243300.1 Wheat extracellular 55.71 53.95
TraesCS7A01G244600.1 Wheat endoplasmic reticulum, extracellular, vacuole 55.71 53.95
HORVU7Hr1G050110.1 Barley vacuole 56.25 53.35
HORVU7Hr1G050140.1 Barley plastid 56.25 53.08
Zm00001d031434_P001 Maize extracellular 54.89 53.02
KRG91824 Soybean extracellular 33.7 51.67
KRH12883 Soybean cytosol 22.28 51.57
EES14271 Sorghum cytosol 55.98 51.37
KRH58376 Soybean endoplasmic reticulum 30.98 33.93
KRH58377 Soybean endoplasmic reticulum 30.43 33.53
KRH58374 Soybean endoplasmic reticulum 29.62 32.54
KRH42258 Soybean extracellular 29.08 32.23
KRH12977 Soybean nucleus 29.08 31.56
KRH42256 Soybean endoplasmic reticulum 28.8 31.55
KRH42259 Soybean extracellular 27.72 30.63
KRH42255 Soybean cytosol, extracellular, mitochondrion, plastid 11.41 29.79
KRG95348 Soybean mitochondrion 27.99 29.34
KRH12976 Soybean cytosol 29.35 29.03
KRH58375 Soybean extracellular, plastid 17.12 26.69
KRH56366 Soybean nucleus 33.7 25.36
KRG90583 Soybean extracellular 34.51 22.97
KRH36172 Soybean nucleus 36.14 22.2
KRH74736 Soybean endoplasmic reticulum, extracellular, plasma membrane 34.24 19.75
KRH45818 Soybean plasma membrane 33.97 19.41
KRH08128 Soybean cytosol 31.79 19.09
KRH56365 Soybean cytosol 8.42 18.79
Protein Annotations
EntrezGene:100804739Gene3D:3.80.10.10MapMan:35.1EMBL:ACUP02008457UniProt:C6ZS03EMBL:FJ014844
EnsemblPlantsGene:GLYMA_13G341500GO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0016020
GO:GO:0016021InterPro:IPR001611InterPro:IPR032675EnsemblPlants:KRH23157ProteinID:KRH23157ProteinID:KRH23157.1
InterPro:LRR_N_plant-typInterPro:LRR_dom_sfInterPro:Leu-rich_rptPFAM:PF08263PFAM:PF13855PANTHER:PTHR44401
PANTHER:PTHR44401:SF2SUPFAM:SSF52058SignalP:SignalP-noTMUniParc:UPI0001B06D4E::
Description
hypothetical protein
Coordinates
chr13:-:43324927..43327135
Molecular Weight (calculated)
39709.2 Da
IEP (calculated)
8.548
GRAVY (calculated)
0.142
Length
368 amino acids
Sequence
(BLAST)
001: MGAVRSITVL LLVLFMAMSS GVRSCPPSDR AALLAFKAAL HEPYLGIFNS WTGADCCHKW YGVSCDQETR RVADINLRGE SEEPIFERAH RTGYMTGYIS
101: PAICKLARLS SITIADWKGI SGEIPRCITT LPFLRIVDLI GNRLSGSIPA GIGRLHRLTV LNVADNLISG TIPTSLANLS SLMHLDLRNN LFSGPIPRNF
201: GSLSMLSRAL LSGNRLSGAI PSSVSQIYRL ADLDLSRNQI SGPIPESLGK MAVLSTLNLD MNKLSGPIPV SLFSSGISDL NLSRNALEGN IPDAFGVRSY
301: FTALDLSYNN LKGAIPKSIS SASYIGHLDL SHNHLCGKIP LGSPFDHLEA SSFVYNDCLC GKPLKPCY
Best Arabidopsis Sequence Match ( AT3G20820.1 )
(BLAST)
001: MNLNVVVLLL LLLISSATCC PPSDRRALLA FRSALHEPYL GIFNSWTGQD CCHNWYGISC DSLTHRVADI NLRGESEDPI FERAHRTGYM TGHISASICE
101: LTRLSAITIA DWKGISGEIP KCITRLPFLR TLDLIGNQIS GGIPYDIGRL NRLAVLNVAD NRISGSIPKS LTNLSSLMHL DLRNNLISGV IPSDVGRLKM
201: LSRALLSGNR ITGRIPESLT NIYRLADVDL SGNQLYGTIP PSLGRMSVLA TLNLDGNKIS GEIPQTLMTS SVMNLNLSRN LLQGKIPEGF GPRSYFTVLD
301: LSYNNLKGPI PRSISGASFI GHLDLSHNHL CGRIPVGSPF DHLEAASFMF NDCLCGKPLR ACLKN
Arabidopsis Description
Leucine-rich repeat (LRR) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LT39]
SUBAcon: [extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.