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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • extracellular 7
  • endoplasmic reticulum 6
  • vacuole 5
  • plasma membrane 5
  • golgi 5
  • plastid 2
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:plastid, secretory
BaCelLo:secretory
EpiLoc:plastid
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:extracellular
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:extracellular
 endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH27500 Soybean endoplasmic reticulum, extracellular 92.08 92.33
KRH43480 Soybean nucleus 66.39 67.88
Solyc01g086920.2.1 Tomato nucleus 28.14 62.8
VIT_13s0064g01260.t01 Wine grape extracellular 59.84 61.52
GSMUA_Achr10P... Banana cytosol 45.36 60.36
GSMUA_Achr4P01520_001 Banana cytosol 45.36 60.36
Bra038737.1-P Field mustard endoplasmic reticulum, extracellular 61.48 60.32
CDY50534 Canola extracellular, vacuole 61.48 60.32
CDY00787 Canola endoplasmic reticulum, extracellular, vacuole 60.93 59.95
Bra001460.1-P Field mustard endoplasmic reticulum, extracellular, vacuole 60.66 59.68
CDY52664 Canola extracellular 60.38 59.25
CDX73812 Canola endoplasmic reticulum, extracellular, vacuole 60.11 59.14
KRH23157 Soybean nucleus 59.29 58.97
PGSC0003DMT400017733 Potato extracellular 59.29 58.97
AT3G12610.1 Thale cress extracellular 59.56 58.6
GSMUA_Achr3P03820_001 Banana endoplasmic reticulum, extracellular 57.92 56.99
KRH12883 Soybean cytosol 24.59 56.6
KRG91824 Soybean extracellular 36.89 56.25
KRH24680 Soybean extracellular 55.46 55.62
Os08t0505900-01 Rice extracellular 57.1 55.0
KRH29680 Soybean endoplasmic reticulum 54.64 51.68
TraesCS7D01G243300.1 Wheat extracellular 53.28 51.32
KRH24681 Soybean extracellular 49.73 51.27
Zm00001d031434_P001 Maize extracellular 53.28 51.18
TraesCS7B01G146800.1 Wheat extracellular 53.01 51.05
TraesCS7A01G244600.1 Wheat endoplasmic reticulum, extracellular, vacuole 53.01 51.05
EES14271 Sorghum cytosol 55.19 50.37
HORVU7Hr1G050110.1 Barley vacuole 53.01 50.0
HORVU7Hr1G050140.1 Barley plastid 53.01 49.74
KRH42258 Soybean extracellular 28.96 31.93
KRH12977 Soybean nucleus 29.23 31.56
KRH58376 Soybean endoplasmic reticulum 28.42 30.95
KRH58377 Soybean endoplasmic reticulum 27.87 30.54
KRH58374 Soybean endoplasmic reticulum 27.87 30.45
KRH42256 Soybean endoplasmic reticulum 27.32 29.76
KRH42259 Soybean extracellular 27.05 29.73
KRG95348 Soybean mitochondrion 27.32 28.49
KRH12976 Soybean cytosol 27.6 27.15
KRH42255 Soybean cytosol, extracellular, mitochondrion, plastid 10.38 26.95
KRH58375 Soybean extracellular, plastid 16.67 25.85
KRH56366 Soybean nucleus 33.06 24.74
KRG90583 Soybean extracellular 35.79 23.69
KRH36172 Soybean nucleus 38.52 23.54
KRH08128 Soybean cytosol 31.97 19.09
KRH56365 Soybean cytosol 8.47 18.79
KRH74736 Soybean endoplasmic reticulum, extracellular, plasma membrane 31.69 18.18
KRH45818 Soybean plasma membrane 31.42 17.86
Protein Annotations
EntrezGene:100795366Gene3D:3.80.10.10MapMan:35.1EMBL:ACUP02008319UniProt:C6ZRZ0ncoils:Coil
EMBL:FJ014831EnsemblPlantsGene:GLYMA_13G204300GO:GO:0003674GO:GO:0005488GO:GO:0005515InterPro:IPR001611
InterPro:IPR032675EnsemblPlants:KRH20845ProteinID:KRH20845ProteinID:KRH20845.1InterPro:LRR_N_plant-typInterPro:LRR_dom_sf
InterPro:Leu-rich_rptPFAM:PF00560PFAM:PF08263PRINTS:PR00019PANTHER:PTHR44401PANTHER:PTHR44401:SF2
SUPFAM:SSF52058SignalP:SignalP-noTMUniParc:UPI0001B06D02SEG:seg::
Description
hypothetical protein
Coordinates
chr13:-:31832093..31833193
Molecular Weight (calculated)
38952.1 Da
IEP (calculated)
7.314
GRAVY (calculated)
0.200
Length
366 amino acids
Sequence
(BLAST)
001: MASSLFFFLT LLLLSVISAV TPCPPSERAA LLAFKAALIE PYLGIFNTWS GTDCCRSWYG VACDPTTGHV TDVSLRGESQ DPMFQKLGRS GYMTGKISPE
101: ICNLSNLTTL VVADWKAVSG EIPACVASLY SLQILDLSGN RISGEISADI GNLRSLTLLS LADNEISGKI PTSVVKLIRL KHLDLSNNQL SGEIPYNFGN
201: LAMLSRALLS GNQLTGSISK SVSKMKRLAD LDVSSNRLTG SIPVELGKMR VLSTLKLDGN SMTGPVPSTL LSNTGMGILN LSRNGFSGTI PDVFGSGSYF
301: MVLDLSFNNF SGRIPGSLSA SKFMGHLDLS YNHLCGTIPI GSPFEHLDAA SFSNNDCLCG NPLKAC
Best Arabidopsis Sequence Match ( AT3G12610.1 )
(BLAST)
001: MRKLLASPFS SLLAVVFISV ISVVRCCSPK DQTALNAFKS SLSEPNLGIF NTWSENTDCC KEWYGISCDP DSGRVTDISL RGESEDAIFQ KAGRSGYMSG
101: SIDPAVCDLT ALTSLVLADW KGITGEIPPC ITSLASLRIL DLAGNKITGE IPAEIGKLSK LAVLNLAENQ MSGEIPASLT SLIELKHLEL TENGITGVIP
201: ADFGSLKMLS RVLLGRNELT GSIPESISGM ERLADLDLSK NHIEGPIPEW MGNMKVLSLL NLDCNSLTGP IPGSLLSNSG LDVANLSRNA LEGTIPDVFG
301: SKTYLVSLDL SHNSLSGRIP DSLSSAKFVG HLDISHNKLC GRIPTGFPFD HLEATSFSDN QCLCGGPLTT SC
Arabidopsis Description
DRT100DRT100 [Source:UniProtKB/TrEMBL;Acc:A0A178VMS3]
SUBAcon: [extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.