CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 10
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	extracellular
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58377	Soybean	endoplasmic reticulum	77.31	77.54
KRH58376	Soybean	endoplasmic reticulum	73.43	73.21
KRH42256	Soybean	endoplasmic reticulum	71.94	71.73
KRH42258	Soybean	extracellular	70.15	70.78
KRH42255	Soybean	cytosol, extracellular, mitochondrion, plastid	28.36	67.38
KRH42259	Soybean	extracellular	63.88	64.26
KRH58375	Soybean	extracellular, plastid	42.69	60.59
KRG95348	Soybean	mitochondrion	48.66	46.44
KRH12977	Soybean	nucleus	45.97	45.43
KRH12976	Soybean	cytosol	46.57	41.94
KRH43480	Soybean	nucleus	32.84	30.73
KRH23157	Soybean	nucleus	32.54	29.62
KRH24680	Soybean	extracellular	31.64	29.04
KRH24681	Soybean	extracellular	29.85	28.17
KRH20845	Soybean	endoplasmic reticulum	30.45	27.87
KRH27500	Soybean	endoplasmic reticulum, extracellular	30.15	27.67
KRH12883	Soybean	cytosol	12.54	26.42
KRH29680	Soybean	endoplasmic reticulum	30.15	26.1
KRG91824	Soybean	extracellular	17.91	25.0
KRH56366	Soybean	nucleus	31.34	21.47
KRH56365	Soybean	cytosol	10.15	20.61
KRH74736	Soybean	endoplasmic reticulum, extracellular, plasma membrane	36.42	19.12
KRH36172	Soybean	nucleus	34.03	19.03
KRG90583	Soybean	extracellular	30.75	18.63
KRH08128	Soybean	cytosol	31.34	17.13
KRH45818	Soybean	plasma membrane	31.34	16.3

Protein Annotations

EMBL:ACUP02003255	EnsemblPlants:KRH58374	EnsemblPlantsGene:GLYMA_05G123700	EntrezGene:100776194	Gene3D:3.80.10.10	InterPro:IPR032675
InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf	PANTHER:PTHR44138	PFAM:PF08263	PRINTS:PR00019	ProteinID:KRH58374
ProteinID:KRH58374.1	SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF52058	UniParc:UPI000233A6EE	UniProt:I1K2V9
MapMan:26.8.3.4	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:31747856..31749159

Molecular Weight (calculated)

37190.4 Da

IEP (calculated)

9.589

GRAVY (calculated)

-0.010

Length

335 amino acids

Sequence
(BLAST)

001: MSRLSILILL LIVLSFSSAL SELCNPRDKQ VLLKIKKELG NPTTLSSWLP TTDCCNNWVG VSCDTVTQTY RVHNLDLSDL NLPKPYSIPF SIGNIPYLEF
101: LSITGTPNII GTIPPTITKL TKLRNLYIKY TNVSGQIPRF LSQIKTLEFL DLSYNKLSGN LPAWLPSLPN LVGISFDGNR ISGAIPDSFG YFPKSFVMLS
201: LSRNRLTGKI PATLAKLDVK FVYLSKNMLE GDASLLFGSE KHTRHMYLGN NSFAFDLGKL GLSKTLEGLD LSHNRLYGTL PKGLTSLKDL YYLDVSYNNL
301: CGKIPRGGKL QEFDASTYAH NKCLCGSPLP SCKRF

Best Arabidopsis Sequence Match ( AT5G06860.1 )
(BLAST)

001: MDKTATLCLL FLFTFLTTCL SKDLCNQNDK NTLLKIKKSL NNPYHLASWD PQTDCCSWYC LECGDATVNH RVTALTIFSG QISGQIPAEV GDLPYLETLV
101: FRKLSNLTGT IQPTIAKLKN LRMLRLSWTN LTGPIPDFIS QLKNLEFLEL SFNDLSGSIP SSLSTLPKIL ALELSRNKLT GSIPESFGSF PGTVPDLRLS
201: HNQLSGPIPK SLGNIDFNRI DLSRNKLQGD ASMLFGSNKT TWSIDLSRNM FQFDISKVDI PKTLGILDLN HNGITGNIPV QWTEAPLQFF NVSYNKLCGH
301: IPTGGKLQTF DSYSYFHNKC LCGAPLEICK

Arabidopsis Description

PGIP1PGIP1 [Source:UniProtKB/TrEMBL;Acc:A0A178UBN4]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.