CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 9
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

nucleus: 21132161
nucleus: 27291164
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG95348	Soybean	mitochondrion	61.65	59.54
KRH12976	Soybean	cytosol	64.9	59.14
Bra009238.1-P	Field mustard	extracellular	56.64	57.83
AT5G06860.1	Thale cress	extracellular	55.75	57.27
Bra005918.1-P	Field mustard	extracellular	34.51	57.07
CDY58887	Canola	extracellular	54.87	56.36
Bra009235.1-P	Field mustard	extracellular	54.87	55.69
CDX70059	Canola	extracellular	54.87	55.69
Bra009234.1-P	Field mustard	extracellular	54.28	55.59
CDY58884	Canola	extracellular	54.28	55.59
Bra005919.1-P	Field mustard	extracellular	54.28	55.59
CDX98965	Canola	extracellular	54.28	55.42
CDX70060	Canola	extracellular	54.28	55.42
CDX98966	Canola	extracellular	54.28	55.09
CDX70058	Canola	extracellular	54.28	55.09
PGSC0003DMT400057136	Potato	extracellular	53.1	54.88
AT5G06870.1	Thale cress	extracellular	53.39	54.85
Solyc07g065090.1.1	Tomato	extracellular	52.8	54.74
Bra005917.1-P	Field mustard	extracellular	54.87	54.39
CDY58888	Canola	extracellular	54.87	54.39
Bra009236.1-P	Field mustard	extracellular	53.39	54.19
CDX81023	Canola	extracellular	53.98	53.51
Bra005916.1-P	Field mustard	extracellular	54.57	53.31
CDY58889	Canola	extracellular	54.28	53.03
CDX70057	Canola	extracellular	52.51	52.98
Bra009237.1-P	Field mustard	extracellular	52.51	52.98
CDX98967	Canola	extracellular	52.21	52.68
VIT_08s0007g07690.t01	Wine grape	extracellular	53.39	52.62
CDX98968	Canola	endoplasmic reticulum, extracellular, vacuole	58.41	51.43
KRH58377	Soybean	endoplasmic reticulum	47.2	47.9
KRH42258	Soybean	extracellular	46.9	47.89
KRH42256	Soybean	endoplasmic reticulum	47.2	47.62
CDX70056	Canola	extracellular	56.64	47.41
KRH58376	Soybean	endoplasmic reticulum	46.9	47.32
KRH42259	Soybean	extracellular	45.43	46.25
KRH58374	Soybean	endoplasmic reticulum	45.43	45.97
GSMUA_Achr9P12430_001	Banana	extracellular	40.71	45.7
TraesCS3A01G459300.1	Wheat	cytosol	19.47	44.59
TraesCS3A01G459200.1	Wheat	extracellular	43.66	43.53
TraesCS3D01G451900.1	Wheat	extracellular	43.36	43.36
TraesCS3D01G451800.1	Wheat	extracellular	43.36	43.24
Zm00001d035753_P001	Maize	extracellular	43.07	42.82
TraesCS3D01G451400.1	Wheat	extracellular	42.77	42.77
EES17528	Sorghum	extracellular	42.77	42.77
EES17529	Sorghum	extracellular	42.77	42.52
TraesCS3B01G498900.1	Wheat	extracellular	42.48	42.35
TraesCS7D01G200000.1	Wheat	cytosol	38.35	41.53
HORVU3Hr1G098730.2	Barley	endoplasmic reticulum, extracellular, mitochondrion	43.66	41.46
TraesCS3A01G459000.1	Wheat	extracellular	41.59	41.35
TraesCS3D01G451500.1	Wheat	extracellular	40.41	41.02
KRH58375	Soybean	extracellular, plastid	28.32	40.68
HORVU3Hr1G098610.1	Barley	extracellular	40.12	40.48
Os05t0104200-01	Rice	extracellular	36.87	40.45
KRH42255	Soybean	cytosol, extracellular, mitochondrion, plastid	16.81	40.43
TraesCS1D01G010800.1	Wheat	extracellular	39.82	40.06
Os05t0104150-01	Rice	extracellular	40.41	40.06
Zm00001d035756_P001	Maize	vacuole	41.0	39.71
TraesCS1A01G012600.1	Wheat	extracellular	39.23	39.58
Os05t0104600-01	Rice	extracellular	38.94	38.94
TraesCS7B01G103900.1	Wheat	extracellular	38.35	38.58
TraesCS1B01G017300.1	Wheat	extracellular	38.05	38.28
TraesCS2D01G470400.1	Wheat	extracellular	38.35	38.01
TraesCS2A01G470500.1	Wheat	extracellular	38.05	37.72
HORVU2Hr1G106620.1	Barley	extracellular	37.17	37.06
TraesCS2B01G493200.1	Wheat	endoplasmic reticulum, extracellular	37.17	36.84
TraesCS2A01G470600.1	Wheat	extracellular	36.58	36.69
TraesCS2B01G493300.1	Wheat	extracellular	37.17	36.52
TraesCS2D01G470500.1	Wheat	extracellular, vacuole	36.58	36.15
HORVU1Hr1G002410.1	Barley	endoplasmic reticulum, vacuole	38.64	35.6
EES17527	Sorghum	extracellular, plastid	40.71	35.11
Os05t0104700-01	Rice	extracellular	39.23	33.17
CDX81022	Canola	extracellular, plasma membrane	48.08	32.21
TraesCS7A01G197500.1	Wheat	extracellular	16.81	31.15
KRH27500	Soybean	endoplasmic reticulum, extracellular	31.56	29.32
KRH20845	Soybean	endoplasmic reticulum	31.56	29.23
KRH23157	Soybean	nucleus	31.56	29.08
KRH43480	Soybean	nucleus	29.79	28.21
KRH12883	Soybean	cytosol	12.98	27.67
KRH24680	Soybean	extracellular	29.79	27.67
KRH24681	Soybean	extracellular	28.91	27.61
KRG91824	Soybean	extracellular	17.99	25.42
KRH29680	Soybean	endoplasmic reticulum	28.32	24.81
KRH56366	Soybean	nucleus	29.79	20.65
KRG90583	Soybean	extracellular	30.09	18.44
KRH36172	Soybean	nucleus	32.45	18.36
KRH56365	Soybean	cytosol	8.55	17.58
KRH08128	Soybean	cytosol	31.27	17.29
KRH74736	Soybean	endoplasmic reticulum, extracellular, plasma membrane	32.15	17.08
KRH45818	Soybean	plasma membrane	30.38	15.99

Protein Annotations

EntrezGene:100783399	MapMan:26.8.3.4	Gene3D:3.80.10.10	EMBL:ACUP02009504	UniProt:C6FF63	EMBL:EU888315
EnsemblPlantsGene:GLYMA_15G209300	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611	InterPro:IPR032675
EnsemblPlants:KRH12977	ProteinID:KRH12977	ProteinID:KRH12977.1	InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt
PFAM:PF08263	PFAM:PF13855	PRINTS:PR00019	PFscan:PS51450	PANTHER:PTHR44138	SUPFAM:SSF52058
SignalP:SignalP-noTM	UniParc:UPI0001AAAB2A	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr15:-:31461926..31463528

Molecular Weight (calculated)

37608.7 Da

IEP (calculated)

8.606

GRAVY (calculated)

-0.139

Length

339 amino acids

Sequence
(BLAST)

001: MLLMLGLCFL LFSAFPLAFS ERCHPQDKKA LLQLQKDLGN PYHIISWNAK EDCCEWFCCV KCDEKTNRVI SVALSSPFPD TNLSAQIPPS VGDLPYLESL
101: VFHKFPKLVG PIQPAIAKLT KLKYLDLSNN NLSGPIPDFF AQLKNLDDID ISFNNLSGPI PSSLGKLPKL AYLDLSRNKL TGSIPASFGS FQKPGPAIML
201: SKNQLSGRLP ASLANLDSDR IDLSRNKLEG DASMLFGSNK RTWSLDLSRN NFAFDLSRVE IPHKTLARLD LNHNKIYGSL PVGLTKVEHF QLFDVSYNQL
301: CGLIPKGGEL QKIDKSLYSH NKCLCGSPLS PCNHKQMTV

Best Arabidopsis Sequence Match ( AT5G06860.1 )
(BLAST)

001: MDKTATLCLL FLFTFLTTCL SKDLCNQNDK NTLLKIKKSL NNPYHLASWD PQTDCCSWYC LECGDATVNH RVTALTIFSG QISGQIPAEV GDLPYLETLV
101: FRKLSNLTGT IQPTIAKLKN LRMLRLSWTN LTGPIPDFIS QLKNLEFLEL SFNDLSGSIP SSLSTLPKIL ALELSRNKLT GSIPESFGSF PGTVPDLRLS
201: HNQLSGPIPK SLGNIDFNRI DLSRNKLQGD ASMLFGSNKT TWSIDLSRNM FQFDISKVDI PKTLGILDLN HNGITGNIPV QWTEAPLQFF NVSYNKLCGH
301: IPTGGKLQTF DSYSYFHNKC LCGAPLEICK

Arabidopsis Description

PGIP1PGIP1 [Source:UniProtKB/TrEMBL;Acc:A0A178UBN4]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.