CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 10
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	extracellular
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

endoplasmic reticulum: 23041469
nucleus: 24385303
mitochondrion: 27780359

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 24385303 doi

S Komatsu, S Hiraga, MZ Nouri

National Institute of Crop Science, National Agriculture and Food Research Organization, Kannondai 2-1-18, Tsukuba, 305-8518, Japan, skomatsu@affrc.go.jp.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58376	Soybean	endoplasmic reticulum	80.54	80.06
KRH58374	Soybean	endoplasmic reticulum	77.54	77.31
KRH42256	Soybean	endoplasmic reticulum	67.66	67.26
KRH42258	Soybean	extracellular	63.77	64.16
KRH42255	Soybean	cytosol, extracellular, mitochondrion, plastid	26.35	62.41
KRH42259	Soybean	extracellular	60.18	60.36
KRH58375	Soybean	extracellular, plastid	40.42	57.2
KRH12977	Soybean	nucleus	47.9	47.2
KRG95348	Soybean	mitochondrion	48.8	46.44
KRH12976	Soybean	cytosol	46.71	41.94
KRH23157	Soybean	nucleus	33.53	30.43
KRH43480	Soybean	nucleus	30.84	28.77
KRH24680	Soybean	extracellular	31.14	28.49
KRH24681	Soybean	extracellular	29.64	27.89
KRH20845	Soybean	endoplasmic reticulum	30.54	27.87
KRH27500	Soybean	endoplasmic reticulum, extracellular	29.64	27.12
KRH12883	Soybean	cytosol	12.28	25.79
KRH29680	Soybean	endoplasmic reticulum	29.64	25.58
KRG91824	Soybean	extracellular	16.77	23.33
KRH56366	Soybean	nucleus	31.14	21.27
KRH56365	Soybean	cytosol	9.58	19.39
KRH74736	Soybean	endoplasmic reticulum, extracellular, plasma membrane	35.63	18.65
KRH36172	Soybean	nucleus	32.34	18.03
KRG90583	Soybean	extracellular	29.64	17.9
KRH45818	Soybean	plasma membrane	31.74	16.46
KRH08128	Soybean	cytosol	29.04	15.82

Protein Annotations

EntrezGene:100777796	MapMan:26.8.3.4	Gene3D:3.80.10.10	EMBL:ACUP02003256	ProteinID:CAI99392.1	EnsemblPlantsGene:GLYMA_05G124000
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611	InterPro:IPR032675	EnsemblPlants:KRH58377
ProteinID:KRH58377	ProteinID:KRH58377.1	InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	PFAM:PF08263
PFAM:PF13855	PRINTS:PR00019	PANTHER:PTHR44138	UniProt:Q0WX05	SUPFAM:SSF52058	SignalP:SignalP-noTM
UniParc:UPI0000DB8418	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:31766562..31767866

Molecular Weight (calculated)

36868.8 Da

IEP (calculated)

8.455

GRAVY (calculated)

-0.008

Length

334 amino acids

Sequence
(BLAST)

001: MSLLSILLLI VMSFSLALSE LCNPQDKQTL LQIKKELGNP TTLSSWHPKT DCCNNSWVGV SCDTVTPTYR VDNLDLSELN LRKPYPIPPS VGSLPCLKFL
101: YITNNPNIVG TIPTTITKLT KLRELNIRYT NISGQIPHFL SQIKALGFLD LSNNKLSGNL PSWLPSLPDL YGISFDNNYI SGPIPDLFAS VSERFGFISL
201: SGNRLIGKIP ASLGKPDMKI VDLSRNMLEG DASVLFGSEK HTERIYLANN LFAFDLGKVR LSKTLGLLDV GHNLIYGTLP KGLTSLKDLY YLDVSYNNLC
301: GEIPRGGKLQ EFDASLYANN KCLCGSPLPS CKRF

Best Arabidopsis Sequence Match ( AT5G06870.1 )
(BLAST)

001: MDKTMTLFLL LSTLLLTTSL AKDLCHKDDK TTLLKIKKSL NNPYHLASWD PKTDCCSWYC LECGDATVNH RVTSLIIQDG EISGQIPPEV GDLPYLTSLI
101: FRKLTNLTGH IQPTIAKLKN LTFLRLSWTN LTGPVPEFLS QLKNLEYIDL SFNDLSGSIP SSLSSLRKLE YLELSRNKLT GPIPESFGTF SGKVPSLFLS
201: HNQLSGTIPK SLGNPDFYRI DLSRNKLQGD ASILFGAKKT TWIVDISRNM FQFDLSKVKL AKTLNNLDMN HNGITGSIPA EWSKAYFQLL NVSYNRLCGR
301: IPKGEYIQRF DSYSFFHNKC LCGAPLPSCK

Arabidopsis Description

PGIP2PGIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178UDM1]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.