Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 10
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
endoplasmic reticulum:
27224218
mitochondrion: 27780359 nucleus: 28499913 |
msms PMID:
27780359
doi
Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH58377 | Soybean | endoplasmic reticulum | 80.06 | 80.54 |
| KRH58374 | Soybean | endoplasmic reticulum | 73.21 | 73.43 |
| KRH42256 | Soybean | endoplasmic reticulum | 69.64 | 69.64 |
| KRH42258 | Soybean | extracellular | 63.99 | 64.76 |
| KRH42255 | Soybean | cytosol, extracellular, mitochondrion, plastid | 25.6 | 60.99 |
| KRH42259 | Soybean | extracellular | 58.63 | 59.16 |
| KRH58375 | Soybean | extracellular, plastid | 39.88 | 56.78 |
| KRG95348 | Soybean | mitochondrion | 49.11 | 47.01 |
| KRH12977 | Soybean | nucleus | 47.32 | 46.9 |
| KRH12976 | Soybean | cytosol | 45.83 | 41.4 |
| KRH23157 | Soybean | nucleus | 33.93 | 30.98 |
| KRH43480 | Soybean | nucleus | 31.25 | 29.33 |
| KRH24680 | Soybean | extracellular | 31.55 | 29.04 |
| KRH20845 | Soybean | endoplasmic reticulum | 30.95 | 28.42 |
| KRH27500 | Soybean | endoplasmic reticulum, extracellular | 29.76 | 27.4 |
| KRH24681 | Soybean | extracellular | 28.87 | 27.32 |
| KRH29680 | Soybean | endoplasmic reticulum | 30.65 | 26.61 |
| KRH12883 | Soybean | cytosol | 12.5 | 26.42 |
| KRG91824 | Soybean | extracellular | 17.56 | 24.58 |
| KRH56366 | Soybean | nucleus | 29.76 | 20.45 |
| KRH36172 | Soybean | nucleus | 32.14 | 18.03 |
| KRH74736 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 34.23 | 18.03 |
| KRG90583 | Soybean | extracellular | 29.17 | 17.72 |
| KRH56365 | Soybean | cytosol | 8.63 | 17.58 |
| KRH45818 | Soybean | plasma membrane | 31.85 | 16.61 |
| KRH08128 | Soybean | cytosol | 29.46 | 16.15 |
Protein Annotations
| EMBL:ACUP02003256 | EnsemblPlants:KRH58376 | EnsemblPlantsGene:GLYMA_05G123900 | EntrezGene:100777271 | Gene3D:3.80.10.10 | InterPro:IPR032675 |
| InterPro:LRR_N_plant-typ | InterPro:LRR_dom_sf | PANTHER:PTHR44138 | PFAM:PF08263 | ProteinID:CAI99393.1 | ProteinID:KRH58376 |
| ProteinID:KRH58376.1 | SEG:seg | SignalP:SignalP-noTM | SUPFAM:SSF52058 | UniParc:UPI0000DB8419 | UniProt:Q0WX04 |
| MapMan:26.8.3.4 | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr5:+:31761509..31762737
Molecular Weight (calculated)
37516.5 Da
IEP (calculated)
9.157
GRAVY (calculated)
-0.099
Length
336 amino acids
Sequence
(BLAST)
(BLAST)
001: MSHLSILFLL LVALSFTPAL SELCNPLDKQ ALLQIKRELG NPTNLSSWNP KTDCCNNNWV GVSCDTVTPT YRVDNLDLSE IYLTKPYPIP PSIGNLPYLK
101: FLFITNSPNI VGTIPTTITK LTKLRELYIR YTSVSGQIPH FLSQMKTLQF LEFSNCKLSG NLPTWLPSLP DLYGVAFDNN RISGAIPDSF GFVSKRFGYM
201: TLSGNRLSGK IPSSLGKLDL KTVDLSRNKL EGDASVLFGS EKRTEMIYLA HNLFAFDFGK VRVPKVLDSL DVGHNRLYGT LPKGLTSLKN LYRFDVSYNK
301: LCGEIPRGGK LQEIDESFYA NNKCLCGSPL PSCKRF
101: FLFITNSPNI VGTIPTTITK LTKLRELYIR YTSVSGQIPH FLSQMKTLQF LEFSNCKLSG NLPTWLPSLP DLYGVAFDNN RISGAIPDSF GFVSKRFGYM
201: TLSGNRLSGK IPSSLGKLDL KTVDLSRNKL EGDASVLFGS EKRTEMIYLA HNLFAFDFGK VRVPKVLDSL DVGHNRLYGT LPKGLTSLKN LYRFDVSYNK
301: LCGEIPRGGK LQEIDESFYA NNKCLCGSPL PSCKRF
001: MDKTATLCLL FLFTFLTTCL SKDLCNQNDK NTLLKIKKSL NNPYHLASWD PQTDCCSWYC LECGDATVNH RVTALTIFSG QISGQIPAEV GDLPYLETLV
101: FRKLSNLTGT IQPTIAKLKN LRMLRLSWTN LTGPIPDFIS QLKNLEFLEL SFNDLSGSIP SSLSTLPKIL ALELSRNKLT GSIPESFGSF PGTVPDLRLS
201: HNQLSGPIPK SLGNIDFNRI DLSRNKLQGD ASMLFGSNKT TWSIDLSRNM FQFDISKVDI PKTLGILDLN HNGITGNIPV QWTEAPLQFF NVSYNKLCGH
301: IPTGGKLQTF DSYSYFHNKC LCGAPLEICK
101: FRKLSNLTGT IQPTIAKLKN LRMLRLSWTN LTGPIPDFIS QLKNLEFLEL SFNDLSGSIP SSLSTLPKIL ALELSRNKLT GSIPESFGSF PGTVPDLRLS
201: HNQLSGPIPK SLGNIDFNRI DLSRNKLQGD ASMLFGSNKT TWSIDLSRNM FQFDISKVDI PKTLGILDLN HNGITGNIPV QWTEAPLQFF NVSYNKLCGH
301: IPTGGKLQTF DSYSYFHNKC LCGAPLEICK
Arabidopsis Description
PGIP1PGIP1 [Source:UniProtKB/TrEMBL;Acc:A0A178UBN4]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.