CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 8
endoplasmic reticulum 6
vacuole 5
plasma membrane 5
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

nucleus: 21132161
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG91824	Soybean	extracellular	50.28	75.0
KRH12883	Soybean	cytosol	32.4	72.96
Solyc01g086920.2.1	Tomato	nucleus	31.01	67.68
KRH20845	Soybean	endoplasmic reticulum	67.88	66.39
GSMUA_Achr4P01520_001	Banana	cytosol	50.28	65.45
VIT_13s0064g01260.t01	Wine grape	extracellular	64.8	65.17
KRH27500	Soybean	endoplasmic reticulum, extracellular	65.92	64.66
GSMUA_Achr10P...	Banana	cytosol	49.44	64.36
PGSC0003DMT400017733	Potato	extracellular	65.36	63.59
KRH23157	Soybean	nucleus	64.8	63.04
CDY00787	Canola	endoplasmic reticulum, extracellular, vacuole	62.57	60.22
CDY50534	Canola	extracellular, vacuole	62.57	60.05
Bra038737.1-P	Field mustard	endoplasmic reticulum, extracellular	62.29	59.79
CDX73812	Canola	endoplasmic reticulum, extracellular, vacuole	62.01	59.68
Bra001460.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	62.01	59.68
CDY52664	Canola	extracellular	62.01	59.52
GSMUA_Achr3P03820_001	Banana	endoplasmic reticulum, extracellular	61.45	59.14
AT3G12610.1	Thale cress	extracellular	61.17	58.87
Os08t0505900-01	Rice	extracellular	61.17	57.63
TraesCS7A01G244600.1	Wheat	endoplasmic reticulum, extracellular, vacuole	57.54	54.21
TraesCS7D01G243300.1	Wheat	extracellular	56.98	53.68
TraesCS7B01G146800.1	Wheat	extracellular	56.7	53.42
Zm00001d031434_P001	Maize	extracellular	56.7	53.28
HORVU7Hr1G050110.1	Barley	vacuole	57.54	53.09
KRH24680	Soybean	extracellular	53.91	52.88
HORVU7Hr1G050140.1	Barley	plastid	57.54	52.82
EES14271	Sorghum	cytosol	58.1	51.87
KRH29680	Soybean	endoplasmic reticulum	53.63	49.61
KRH24681	Soybean	extracellular	48.88	49.3
KRH58374	Soybean	endoplasmic reticulum	30.73	32.84
KRH42258	Soybean	extracellular	29.61	31.93
KRH58376	Soybean	endoplasmic reticulum	29.33	31.25
KRH58377	Soybean	endoplasmic reticulum	28.77	30.84
KRH42256	Soybean	endoplasmic reticulum	28.49	30.36
KRH42259	Soybean	extracellular	27.93	30.03
KRH12977	Soybean	nucleus	28.21	29.79
KRG95348	Soybean	mitochondrion	27.37	27.92
KRH42255	Soybean	cytosol, extracellular, mitochondrion, plastid	10.61	26.95
KRH12976	Soybean	cytosol	27.09	26.08
KRH58375	Soybean	extracellular, plastid	16.76	25.42
KRH56366	Soybean	nucleus	31.84	23.31
KRG90583	Soybean	extracellular	35.75	23.15
KRH36172	Soybean	nucleus	38.27	22.87
KRH56365	Soybean	cytosol	8.94	19.39
KRH08128	Soybean	cytosol	32.12	18.76
KRH74736	Soybean	endoplasmic reticulum, extracellular, plasma membrane	32.4	18.18
KRH45818	Soybean	plasma membrane	32.12	17.86

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	EMBL:ACUP02004866	EnsemblPlantsGene:GLYMA_08G152800	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001611	InterPro:IPR032675	UniProt:K7L6W0	EnsemblPlants:KRH43480	ProteinID:KRH43480
ProteinID:KRH43480.1	InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp	PFAM:PF00560
PFAM:PF08263	PFAM:PF13855	PANTHER:PTHR44401	PANTHER:PTHR44401:SF2	SMART:SM00369	SUPFAM:SSF52058
SignalP:SignalP-noTM	UniParc:UPI000295B3B7	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:11759486..11761401

Molecular Weight (calculated)

37901.7 Da

IEP (calculated)

5.591

GRAVY (calculated)

0.217

Length

358 amino acids

Sequence
(BLAST)

001: MAWHSFLLLA TAILAVVCSA VSGCSPSDRA ALLAFRKALS EPYLGLFNSW TGSNCCLDWY GISCDATTGR SEDPIFEKAG RSGYMTGKLS EAICGIDTLT
101: TLVVADWKDI AGEIPTCVTA LPSLRILDLI GNKLSGEIPA DVGKLSRLTV LNLADNALSG KIPASITQLG SLKHLDLSNN QLCGEIPEDF GNLGMLSRML
201: LSRNQLTGKI PVSVSKIYRL ADLDLSANRL SGSVPFELGT MPVLSTLNLD SNSLEGLIPS SLLSNGGMGI LNLSRNGFEG SIPDVFGSHS YFMALDLSFN
301: NLKGRVPSSL ASAKFIGHLD LSHNHLCGSI PLGAPFDHLE ASSFTSNDCL CGNPLKTC

Best Arabidopsis Sequence Match ( AT3G20820.1 )
(BLAST)

001: MNLNVVVLLL LLLISSATCC PPSDRRALLA FRSALHEPYL GIFNSWTGQD CCHNWYGISC DSLTHRVADI NLRGESEDPI FERAHRTGYM TGHISASICE
101: LTRLSAITIA DWKGISGEIP KCITRLPFLR TLDLIGNQIS GGIPYDIGRL NRLAVLNVAD NRISGSIPKS LTNLSSLMHL DLRNNLISGV IPSDVGRLKM
201: LSRALLSGNR ITGRIPESLT NIYRLADVDL SGNQLYGTIP PSLGRMSVLA TLNLDGNKIS GEIPQTLMTS SVMNLNLSRN LLQGKIPEGF GPRSYFTVLD
301: LSYNNLKGPI PRSISGASFI GHLDLSHNHL CGRIPVGSPF DHLEAASFMF NDCLCGKPLR ACLKN

Arabidopsis Description

Leucine-rich repeat (LRR) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LT39]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.