CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 10
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	extracellular
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

endoplasmic reticulum: 23041469
endoplasmic reticulum: 27224218

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58375	Soybean	extracellular, plastid	55.06	78.39
KRH58374	Soybean	endoplasmic reticulum	71.73	71.94
KRH58376	Soybean	endoplasmic reticulum	69.64	69.64
KRH58377	Soybean	endoplasmic reticulum	67.26	67.66
KRH42258	Soybean	extracellular	65.48	66.27
KRH42255	Soybean	cytosol, extracellular, mitochondrion, plastid	27.38	65.25
KRH42259	Soybean	extracellular	63.69	64.26
KRH12977	Soybean	nucleus	47.62	47.2
KRG95348	Soybean	mitochondrion	48.81	46.72
KRH12976	Soybean	cytosol	45.83	41.4
KRH23157	Soybean	nucleus	31.55	28.8
KRH43480	Soybean	nucleus	30.36	28.49
KRH24680	Soybean	extracellular	30.36	27.95
KRH20845	Soybean	endoplasmic reticulum	29.76	27.32
KRH27500	Soybean	endoplasmic reticulum, extracellular	29.46	27.12
KRH24681	Soybean	extracellular	27.38	25.92
KRH12883	Soybean	cytosol	11.9	25.16
KRH29680	Soybean	endoplasmic reticulum	28.87	25.06
KRG91824	Soybean	extracellular	16.37	22.92
KRH56366	Soybean	nucleus	30.95	21.27
KRH56365	Soybean	cytosol	9.23	18.79
KRH08128	Soybean	cytosol	31.85	17.46
KRH36172	Soybean	nucleus	30.95	17.36
KRG90583	Soybean	extracellular	28.27	17.18
KRH74736	Soybean	endoplasmic reticulum, extracellular, plasma membrane	32.44	17.08
KRH45818	Soybean	plasma membrane	29.76	15.53

Protein Annotations

EMBL:ACUP02004794	EnsemblPlants:KRH42256	EnsemblPlantsGene:GLYMA_08G078900	EntrezGene:100798936	Gene3D:3.80.10.10	InterPro:IPR032675
InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf	PANTHER:PTHR44138	PFAM:PF08263	ProteinID:KRH42256	ProteinID:KRH42256.1
SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF52058	UniParc:UPI00023386D1	UniProt:I1KR99	MapMan:26.8.3.4

Description

hypothetical protein

Coordinates

chr8:+:6011316..6012551

Molecular Weight (calculated)

37383.0 Da

IEP (calculated)

8.006

GRAVY (calculated)

-0.079

Length

336 amino acids

Sequence
(BLAST)

001: MSHSSTLFLF LIVLFFTPAL SELCNPQDKE ALLQIKKEFG NPTTLSSWLP TSDCCNNNWV GVSCANKTQS YRVNHLDLND LNLPKPYPIP PSVGNLPYLN
101: FLSITNTNNL VGTIPPTITK LTMLRELQIR FTNVSGEIPH FLSQIKTLES IIFHYNNFSG NLPPWLPSLP NLYRVSLDGN RISGTIPDSF GSFSDSLKLM
201: TFSDNRLTGE IPATLAKLDF DFVDLSQNML EGDASVLFGS EKHTLQINLA NNSFAFDFGK VRVSKTLLIL YLSHNRLYGA LPEGLTSLKN LGTFDVSYNE
301: LCGKIPRGGR LQKIDVSSYS HNKCLCGSPL PKCKHL

Best Arabidopsis Sequence Match ( AT3G12145.1 )
(BLAST)

001: MKLFVHLSIF FSILFITLPS SYSCTENDKN ALLQIKKALG NPPLLSSWNP RTDCCTGWTG VECTNRRVTG LSVTSGEVSG QISYQIGDLV DLRTLDFSYL
101: PHLTGNIPRT ITKLKNLNTL YLKHTSLSGP IPDYISELKS LTFLDLSFNQ FTGPIPGSLS QMPKLEAIQI NDNKLTGSIP NSFGSFVGNV PNLYLSNNKL
201: SGKIPESLSK YDFNAVDLSG NGFEGDAFMF FGRNKTTVRV DLSRNMFNFD LVKVKFARSI VSLDLSQNHI YGKIPPALTK LHLEHFNVSD NHLCGKIPSG
301: GLLQTFEPSA FAHNICLCGT PLKAC

Arabidopsis Description

FLR1FTM4 [Source:UniProtKB/TrEMBL;Acc:A0A178V9V7]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.