CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5
plastid 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular, nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	extracellular

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG90583	Soybean	extracellular	85.64	92.77
VIT_10s0071g00860.t01	Wine grape	extracellular, vacuole	66.11	67.01
Solyc04g008830.1.1	Tomato	nucleus	60.93	61.55
PGSC0003DMT400065091	Potato	extracellular	60.77	61.38
Bra026499.1-P	Field mustard	plastid	50.42	61.01
CDY16850	Canola	plastid	50.08	60.61
CDX88024	Canola	extracellular, vacuole	58.93	60.14
Bra009680.1-P	Field mustard	extracellular, vacuole	58.76	59.97
GSMUA_Achr1P06920_001	Banana	plastid	22.37	59.56
CDX80361	Canola	extracellular, vacuole	58.26	59.45
AT5G23400.1	Thale cress	vacuole	58.26	59.25
CDY64876	Canola	extracellular, vacuole	56.43	57.98
TraesCS2D01G561100.1	Wheat	extracellular	37.9	51.24
TraesCS2A01G593600.1	Wheat	endoplasmic reticulum, extracellular	38.06	51.01
Os04t0677200-01	Rice	cytosol, peroxisome	37.06	50.8
TraesCS2B01G590900.1	Wheat	extracellular	36.89	49.44
Zm00001d026617_P001	Maize	extracellular	42.4	49.22
KXG27431	Sorghum	vacuole	42.9	49.05
HORVU2Hr1G119550.1	Barley	cytosol	22.7	38.75
KRH20845	Soybean	endoplasmic reticulum	23.54	38.52
KRH43480	Soybean	nucleus	22.87	38.27
KRH27500	Soybean	endoplasmic reticulum, extracellular	23.04	37.81
KRH24681	Soybean	extracellular	22.04	37.18
KRH23157	Soybean	nucleus	22.2	36.14
KRH08128	Soybean	cytosol	36.39	35.56
KRH56366	Soybean	nucleus	28.55	34.97
KRH24680	Soybean	extracellular	20.87	34.25
KRH58374	Soybean	endoplasmic reticulum	19.03	34.03
KRG95348	Soybean	mitochondrion	19.7	33.62
KRH42258	Soybean	extracellular	18.36	33.13
KRH74736	Soybean	endoplasmic reticulum, extracellular, plasma membrane	35.06	32.92
KRH42259	Soybean	extracellular	18.2	32.73
KRH56365	Soybean	cytosol	9.02	32.73
KRH12883	Soybean	cytosol	8.68	32.7
KRH45818	Soybean	plasma membrane	35.06	32.61
KRH12977	Soybean	nucleus	18.36	32.45
KRH58377	Soybean	endoplasmic reticulum	18.03	32.34
KRH29680	Soybean	endoplasmic reticulum	20.87	32.3
KRH58376	Soybean	endoplasmic reticulum	18.03	32.14
KRH42256	Soybean	endoplasmic reticulum	17.36	30.95
KRH12976	Soybean	cytosol	19.2	30.91
KRG91824	Soybean	extracellular	12.19	30.42
KRH42255	Soybean	cytosol, extracellular, mitochondrion, plastid	6.84	29.08
KRH58375	Soybean	extracellular, plastid	10.18	25.85

Protein Annotations

EntrezGene:100810872	Gene3D:3.80.10.10	MapMan:35.1	EMBL:ACUP02006721	EnsemblPlantsGene:GLYMA_10G288400	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	UniProt:I1LFB3	InterPro:IPR001611	InterPro:IPR032675	EnsemblPlants:KRH36172
ProteinID:KRH36172	ProteinID:KRH36172.1	InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_typical-subtyp
PFAM:PF08263	PFAM:PF13855	PANTHER:PTHR27000	PANTHER:PTHR27000:SF322	SMART:SM00369	SUPFAM:SSF52058
SignalP:SignalP-noTM	UniParc:UPI00023CDA94	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:50725819..50728149

Molecular Weight (calculated)

65196.8 Da

IEP (calculated)

7.058

GRAVY (calculated)

0.024

Length

599 amino acids

Sequence
(BLAST)

001: MQLGKWVVDL VLIFSLLSPQ FSGSVAETTS SSTPICSEED RASLLRFKAS ISQDTTETLS TWTSRDCCDG GWEGVQCNPS TGRVNVLQIQ RPGRDDDDET
101: YMKGTLSPSL GNLHFLEVMV ISGMKHITGP IPNSFSNLTH LTQLILEDNS LGGCIPPSLG RLSLLQSLSL SGNHLKGQIP PTLGALRNLA QLNLAKNSLT
201: GPIPLSFKTL INLQYFDLSY NLLSSTIPDF LGEFKNLTYL DLSSNLLTGK IPVSLFGLVN LLDLSLSYNK LTGNIPDQVG NLKSLTSLQL SGNLLTGNIP
301: LSISRLQNLW YLNVSRNCLS DPLPVIPSKG IPALLSIDMS YNNLSLGIVP DWIRSKQLKD VHLAGCKLKG DLPHFTRPDS LSSIDLSDNY LVEGISNFFT
401: NMSSLQKVKL SNNQLRFDIS EIKLPTELSS IDLHANLLVG SLSTIINNRT SSSLEVIDVS NNFISGHIPE FVEGSSLKVL NLGSNNISGP IPVSISNLID
501: LERLDISRNH ILGTIPSSLG QLLKLLWLDV SINGLTGQIP SSLSQITGLK HANFRANRLC GEIPQTRPFN IFRPVAYAHN LCLCGKPLEP CKKQGSMGQ

Best Arabidopsis Sequence Match ( AT5G23400.1 )
(BLAST)

001: MQNLKWVLMN LLFVSALVRN FVLSSSQQVI CSSQDRATLL GFKSSIIEDT TGVLDSWVGK DCCNGDWEGV QCNPATGKVT GLVLQSAVNE PTLYMKGTLS
101: PSLGNLRSLE LLLITGNKFI TGSIPNSFSN LTSLRQLILD DNSLQGNVLS SLGHLPLLEI LSLAGNRFSG LVPASFGSLR RLTTMNLARN SFSGPIPVTF
201: KNLLKLENLD LSSNLLSGPI PDFIGQFQNL TNLYLSSNRF SGVLPVSVYS LRKLQTMSLE RNGLTGPLSD RFSYLKSLTS LQLSGNKFIG HIPASITGLQ
301: NLWSLNLSRN LFSDPLPVVG ARGFPSLLSI DLSYNNLNLG AIPSWIRDKQ LSDINLAGCK LRGTFPKLTR PTTLTSLDLS DNFLTGDVSA FLTSLTNVQK
401: VKLSKNQLRF DLSKLKLPEG VASIDLSSNL VTGSLSSLIN NKTSSFLEEI HLTNNQISGR IPDFGESLNL KVLNIGSNKI SGQIPSSISN LVELVRLDIS
501: RNHITGGIPQ AIGQLAQLKW LDLSINALTG RIPDSLLNIK TIKHASFRAN RLCGQIPQGR PFNIFPAAAY LHNLCLCGKP LPACRKTMK

Arabidopsis Description

Disease resistance protein-like [Source:UniProtKB/TrEMBL;Acc:Q9FHL8]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.