Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- mitochondrion 6
- cytosol 1
- extracellular 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400017733 | Potato | extracellular | 95.73 | 42.66 |
| GSMUA_Achr4P01520_001 | Banana | cytosol | 65.85 | 39.27 |
| GSMUA_Achr10P... | Banana | cytosol | 65.24 | 38.91 |
| VIT_13s0064g01260.t01 | Wine grape | extracellular | 72.56 | 33.43 |
| KRH43480 | Soybean | nucleus | 67.68 | 31.01 |
| Bra001460.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 68.29 | 30.11 |
| CDY00787 | Canola | endoplasmic reticulum, extracellular, vacuole | 68.29 | 30.11 |
| CDX73812 | Canola | endoplasmic reticulum, extracellular, vacuole | 67.07 | 29.57 |
| Solyc11g056680.1.1 | Tomato | extracellular | 65.24 | 29.4 |
| CDY52664 | Canola | extracellular | 65.85 | 28.95 |
| GSMUA_Achr3P03820_001 | Banana | endoplasmic reticulum, extracellular | 65.24 | 28.76 |
| AT3G12610.1 | Thale cress | extracellular | 65.24 | 28.76 |
| Bra038737.1-P | Field mustard | endoplasmic reticulum, extracellular | 65.24 | 28.69 |
| CDY50534 | Canola | extracellular, vacuole | 65.24 | 28.69 |
| KRH27500 | Soybean | endoplasmic reticulum, extracellular | 62.8 | 28.22 |
| KRH20845 | Soybean | endoplasmic reticulum | 62.8 | 28.14 |
| Os08t0505900-01 | Rice | extracellular | 59.15 | 25.53 |
| TraesCS7B01G146800.1 | Wheat | extracellular | 57.93 | 25.0 |
| TraesCS7A01G244600.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 57.93 | 25.0 |
| Zm00001d031434_P001 | Maize | extracellular | 57.93 | 24.93 |
| TraesCS7D01G243300.1 | Wheat | extracellular | 57.32 | 24.74 |
| HORVU7Hr1G050110.1 | Barley | vacuole | 57.93 | 24.48 |
| HORVU7Hr1G050140.1 | Barley | plastid | 57.93 | 24.36 |
| EES14271 | Sorghum | cytosol | 57.32 | 23.44 |
| Solyc09g014590.2.1 | Tomato | extracellular | 26.22 | 13.78 |
| Solyc09g014480.1.1 | Tomato | extracellular | 27.44 | 13.43 |
| Solyc07g065090.1.1 | Tomato | extracellular | 25.61 | 12.84 |
| Solyc10g052880.1.1 | Tomato | extracellular | 30.49 | 10.46 |
| Solyc04g008830.1.1 | Tomato | nucleus | 35.98 | 9.95 |
| Solyc05g006670.1.1 | Tomato | extracellular | 38.41 | 9.91 |
| Solyc01g011050.2.1 | Tomato | endoplasmic reticulum, extracellular, vacuole | 15.85 | 7.43 |
| KRH12883 | Soybean | cytosol | 6.1 | 6.29 |
| KRG91824 | Soybean | extracellular | 8.54 | 5.83 |
Protein Annotations
| EnsemblPlants:Solyc01g086920.2.1 | EnsemblPlantsGene:Solyc01g086920.2 | Gene3D:3.80.10.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR001611 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt | PANTHER:PTHR44401 | PANTHER:PTHR44401:SF2 |
| PFAM:PF13516 | PFAM:PF13855 | SEG:seg | SUPFAM:SSF52058 | UniParc:UPI0002762F82 | UniProt:K4AY85 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr1:+:81826561..81827991
Molecular Weight (calculated)
17718.2 Da
IEP (calculated)
7.463
GRAVY (calculated)
-0.084
Length
164 amino acids
Sequence
(BLAST)
(BLAST)
001: MMSRALLNKN KLTGSIPNSI TQLRRLADLD LSMNQITGSL PAQLGSMPVL STLNLDSNQI TSSIPTNLLS SSGLNILNLS RNLLEGELPD VFCTKTYFTH
101: LDLSYNNLRG SIPKSLSSAK FIGHLDLSHN HLCGSIPNGS PFDHLEASSF SNNDCLCGSP LRTC
101: LDLSYNNLRG SIPKSLSSAK FIGHLDLSHN HLCGSIPNGS PFDHLEASSF SNNDCLCGSP LRTC
001: MNLNVVVLLL LLLISSATCC PPSDRRALLA FRSALHEPYL GIFNSWTGQD CCHNWYGISC DSLTHRVADI NLRGESEDPI FERAHRTGYM TGHISASICE
101: LTRLSAITIA DWKGISGEIP KCITRLPFLR TLDLIGNQIS GGIPYDIGRL NRLAVLNVAD NRISGSIPKS LTNLSSLMHL DLRNNLISGV IPSDVGRLKM
201: LSRALLSGNR ITGRIPESLT NIYRLADVDL SGNQLYGTIP PSLGRMSVLA TLNLDGNKIS GEIPQTLMTS SVMNLNLSRN LLQGKIPEGF GPRSYFTVLD
301: LSYNNLKGPI PRSISGASFI GHLDLSHNHL CGRIPVGSPF DHLEAASFMF NDCLCGKPLR ACLKN
101: LTRLSAITIA DWKGISGEIP KCITRLPFLR TLDLIGNQIS GGIPYDIGRL NRLAVLNVAD NRISGSIPKS LTNLSSLMHL DLRNNLISGV IPSDVGRLKM
201: LSRALLSGNR ITGRIPESLT NIYRLADVDL SGNQLYGTIP PSLGRMSVLA TLNLDGNKIS GEIPQTLMTS SVMNLNLSRN LLQGKIPEGF GPRSYFTVLD
301: LSYNNLKGPI PRSISGASFI GHLDLSHNHL CGRIPVGSPF DHLEAASFMF NDCLCGKPLR ACLKN
Arabidopsis Description
Leucine-rich repeat (LRR) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LT39]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.