Factsheet for Solyc11g056680.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
plastid 2
extracellular 6
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

plastid: 20363867
extracellular: 22364583
extracellular: 22892874
plastid: 22908117
nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 22892874 doi

EH Konozy, H Rogniaux, M Causse, M Faurobert

Unité de Génétique et Amélioration des Fruits et Légumes, INRA, BP 94, 84143 Montfavet, France. ehkonozy@yahoo.com

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400003166	Potato	extracellular, vacuole	95.05	95.05
KRH23157	Soybean	nucleus	72.25	71.47
VIT_06s0004g01750.t01	Wine grape	extracellular	70.05	70.05
CDY60388	Canola	extracellular	69.23	69.04
CDY27559	Canola	extracellular	68.96	68.77
Bra035741.1-P	Field mustard	extracellular	68.13	67.95
CDY19601	Canola	extracellular	68.13	67.95
AT3G20820.1	Thale cress	extracellular	67.86	67.67
CDY06385	Canola	extracellular	67.58	67.4
Solyc01g086920.2.1	Tomato	nucleus	29.4	65.24
Bra023925.1-P	Field mustard	extracellular	66.21	64.1
AT5G12940.1	Thale cress	extracellular	64.29	63.07
GSMUA_Achr10P...	Banana	cytosol	47.53	62.91
GSMUA_Achr4P01520_001	Banana	cytosol	46.98	62.18
Bra023383.1-P	Field mustard	extracellular	57.14	59.94
CDX85681	Canola	extracellular	56.59	59.71
CDX91155	Canola	extracellular	56.59	59.54
Bra008869.1-P	Field mustard	extracellular, plasma membrane	60.71	59.09
CDY68308	Canola	extracellular	60.44	58.82
KRH24680	Soybean	extracellular	58.24	58.08
CDY69775	Canola	extracellular, plasma membrane	59.34	57.29
CDY53975	Canola	extracellular	58.24	56.84
Bra008870.1-P	Field mustard	extracellular	58.24	56.84
GSMUA_Achr3P03820_001	Banana	endoplasmic reticulum, extracellular	57.97	56.72
KRH29680	Soybean	endoplasmic reticulum	60.16	56.59
CDY69275	Canola	extracellular	57.69	56.15
Os08t0505900-01	Rice	extracellular	58.52	56.05
TraesCS7D01G243300.1	Wheat	extracellular	57.42	55.0
TraesCS7B01G146800.1	Wheat	extracellular	57.42	55.0
TraesCS7A01G244600.1	Wheat	endoplasmic reticulum, extracellular, vacuole	57.42	55.0
KRH24681	Soybean	extracellular	53.02	54.37
HORVU7Hr1G050110.1	Barley	vacuole	57.69	54.12
HORVU7Hr1G050140.1	Barley	plastid	57.69	53.85
Zm00001d031434_P001	Maize	extracellular	53.85	51.44
EES14271	Sorghum	cytosol	56.04	50.87
Solyc09g014480.1.1	Tomato	extracellular	31.59	34.33
Solyc07g065090.1.1	Tomato	extracellular	30.22	33.64
Solyc09g014590.2.1	Tomato	extracellular	25.82	30.13
Solyc01g011050.2.1	Tomato	endoplasmic reticulum, extracellular, vacuole	25.82	26.86
Solyc10g052880.1.1	Tomato	extracellular	34.34	26.15
Solyc04g008830.1.1	Tomato	nucleus	37.09	22.77
Solyc05g006670.1.1	Tomato	extracellular	36.54	20.91

Protein Annotations

EnsemblPlants:Solyc11g056680.1.1	EnsemblPlantsGene:Solyc11g056680.1	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_N_plant-typ	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	PANTHER:PTHR44401
PANTHER:PTHR44401:SF2	PFAM:PF08263	PFAM:PF13855	SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF52058
UniParc:UPI000276AABD	UniProt:K4D8X9	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr11:+:47406482..47407576

Molecular Weight (calculated)

39923.4 Da

IEP (calculated)

8.405

GRAVY (calculated)

-0.027

Length

364 amino acids

Sequence
(BLAST)

001: MGSFMYIAIL LAAIISTVHS CPPSDRAALL SFRAALNESH LGIFNSWKGN DCCHEWYGVS CDPTTHRIAD INLRGESEDP LFEKAHRTGY MTGTISPSIC
101: KLERLSSLTI ADWKGITGSI PSCITSLPFL RIIDLVGNKL TGSIPSTIGR LSRLTVLNVA ENQLTGYIPR SLTNLSSLMH LDLRNNGIYG NIPTNFGKLR
201: MLSRALLSRN KLTGPIPYSI SYIYRLSDLD LSLNKLSGTI PPSLGKMHVL ATLNLDGNHI SGTIPPSLMN SRINILNLSK NAMEGYIPDS FDEKSYFMVM
301: DLSYNKLKGS IPKSISSATF IGHLDVSHNH LCGQIPEGSP FDHLEASSFT YNDCLCGKPL KPCR

Best Arabidopsis Sequence Match ( AT3G20820.1 )
(BLAST)

001: MNLNVVVLLL LLLISSATCC PPSDRRALLA FRSALHEPYL GIFNSWTGQD CCHNWYGISC DSLTHRVADI NLRGESEDPI FERAHRTGYM TGHISASICE
101: LTRLSAITIA DWKGISGEIP KCITRLPFLR TLDLIGNQIS GGIPYDIGRL NRLAVLNVAD NRISGSIPKS LTNLSSLMHL DLRNNLISGV IPSDVGRLKM
201: LSRALLSGNR ITGRIPESLT NIYRLADVDL SGNQLYGTIP PSLGRMSVLA TLNLDGNKIS GEIPQTLMTS SVMNLNLSRN LLQGKIPEGF GPRSYFTVLD
301: LSYNNLKGPI PRSISGASFI GHLDLSHNHL CGRIPVGSPF DHLEAASFMF NDCLCGKPLR ACLKN

Arabidopsis Description

Leucine-rich repeat (LRR) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LT39]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.