CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85681	Canola	extracellular	94.51	94.78
CDY68308	Canola	extracellular	81.5	75.4
CDY69775	Canola	extracellular, plasma membrane	80.92	74.27
CDY53975	Canola	extracellular	79.19	73.46
CDY69275	Canola	extracellular	78.61	72.73
AT5G12940.1	Thale cress	extracellular	76.59	71.43
CDY60388	Canola	extracellular	65.9	62.47
CDY27559	Canola	extracellular	65.32	61.92
CDY19601	Canola	extracellular	64.16	60.82
CDY06385	Canola	extracellular	63.87	60.55
KRH23157	Soybean	nucleus	62.43	58.7
VIT_06s0004g01750.t01	Wine grape	extracellular	60.4	57.42
Solyc11g056680.1.1	Tomato	extracellular	59.54	56.59
PGSC0003DMT400003166	Potato	extracellular, vacuole	58.67	55.77
GSMUA_Achr10P...	Banana	cytosol	44.22	55.64
GSMUA_Achr4P01520_001	Banana	cytosol	43.64	54.91
KRH24680	Soybean	extracellular	54.62	51.78
CDX73812	Canola	endoplasmic reticulum, extracellular, vacuole	54.91	51.08
CDY00787	Canola	endoplasmic reticulum, extracellular, vacuole	54.05	50.27
CDY52664	Canola	extracellular	53.47	49.6
Os08t0505900-01	Rice	extracellular	54.34	49.47
TraesCS7B01G146800.1	Wheat	extracellular	54.05	49.21
TraesCS7D01G243300.1	Wheat	extracellular	54.05	49.21
KRH29680	Soybean	endoplasmic reticulum	54.91	49.1
CDY50534	Canola	extracellular, vacuole	52.89	49.06
TraesCS7A01G244600.1	Wheat	endoplasmic reticulum, extracellular, vacuole	53.76	48.95
HORVU7Hr1G050110.1	Barley	vacuole	54.05	48.2
HORVU7Hr1G050140.1	Barley	plastid	54.05	47.95
GSMUA_Achr3P03820_001	Banana	endoplasmic reticulum, extracellular	51.16	47.58
Zm00001d031434_P001	Maize	extracellular	51.45	46.72
KRH24681	Soybean	extracellular	47.69	46.48
EES14271	Sorghum	cytosol	53.18	45.89
CDY08451	Canola	endoplasmic reticulum, extracellular	31.21	33.13
CDY42127	Canola	extracellular	30.64	32.52
CDY08448	Canola	extracellular	30.35	32.11
CDY42130	Canola	extracellular	29.77	31.5
CDY42131	Canola	extracellular	29.19	31.27
CDX70057	Canola	extracellular	30.06	30.95
CDY42129	Canola	cytosol	28.9	30.86
CDY14065	Canola	extracellular	28.9	30.86
CDY08450	Canola	extracellular	28.61	30.65
CDY05006	Canola	extracellular	28.61	30.56
CDX70058	Canola	extracellular	29.48	30.54
CDY52623	Canola	extracellular, vacuole	28.61	30.46
CDX98967	Canola	extracellular	29.48	30.36
CDX70059	Canola	extracellular	28.9	29.94
CDY58884	Canola	extracellular	28.61	29.91
CDY50569	Canola	extracellular, vacuole	28.03	29.85
CDX98966	Canola	extracellular	28.61	29.64
CDX70060	Canola	extracellular	28.32	29.52
CDY58887	Canola	extracellular	28.03	29.39
CDX98965	Canola	extracellular	28.03	29.22
CDY58888	Canola	extracellular	28.61	28.95
CDX81023	Canola	extracellular	27.75	28.07
CDY58889	Canola	extracellular	28.03	27.95
CDX98968	Canola	endoplasmic reticulum, extracellular, vacuole	26.88	24.16
CDY40923	Canola	extracellular, vacuole	30.92	22.81
CDX70056	Canola	extracellular	26.59	22.72
CDX93759	Canola	endoplasmic reticulum, extracellular, vacuole	10.69	22.7
CDY15279	Canola	plastid	27.46	22.3
CDX88024	Canola	extracellular, vacuole	36.42	21.47
CDY38783	Canola	extracellular	25.43	21.46
CDX80361	Canola	extracellular, vacuole	35.84	21.12
CDY11623	Canola	extracellular	25.43	21.05
CDY64876	Canola	extracellular, vacuole	34.97	20.75
CDY16850	Canola	plastid	29.19	20.4
CDX93758	Canola	plastid	14.45	19.46
CDX81022	Canola	extracellular, plasma membrane	23.99	16.4

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	EnsemblPlants:CDX91155	ProteinID:CDX91155	ProteinID:CDX91155.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00151950001	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_N_plant-typ
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	PFAM:PF08263	PFAM:PF13855	PFscan:PS51257	PANTHER:PTHR44401
PANTHER:PTHR44401:SF2	SUPFAM:SSF52058	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0004EEB1B5	SEG:seg

Description

BnaC02g04420D

Coordinates

chrLK031865:-:1083111..1084282

Molecular Weight (calculated)

36750.8 Da

IEP (calculated)

8.265

GRAVY (calculated)

0.209

Length

346 amino acids

Sequence
(BLAST)

001: MDAKKAVTIV FCNAVVLLLA TVAAQACLPS DRAALLEFRS HLNEPYIGVF NSWKGQDCCH GWYGRAKRKG VMTGSISPAI CELTQLSGVT LSDWEGISGA
101: IPACITNLLA VRHVDLVGNK ISGEIPANIG NLLKLTVLNL ADNLISGAIP PSIARLTSLT HLDLRNNGLT GVIPVYIGRL KMLSRVLLSG NKLSGQIPES
201: LTRIYRLADL ELSMNRITGT IPPSFGRMSV LATLNLDGNL ISGEIPGSLM TSSISNLNLS GNLLGGKIPN AFGPRSYFTV LDLSNNRLQG EIPESITTAS
301: FIGHLDVSHN QLCGKIPAGS PFDHLDATSF GYNRCLCGTP LGDCGK

Best Arabidopsis Sequence Match ( AT5G12940.1 )
(BLAST)

001: MDTKKSLVIL LTNVVVFLLL STTVHSCLPS DRAALLEFRA KLNEPYIGVF NTWKGLDCCK GWYGVSCDPN TRRVAGITLR GESEDPLFQK AKRSGLMTGS
101: ISPSICKLTR LSGIIIADWK GISGVIPSCI ENLPFLRHLD LVGNKFSGVI PANIGKLLRL KVLNLADNHL YGVIPPSITR LVSLSHLDLR NNNISGVIPR
201: DIGRLKMVSR VLLSGNKISG QIPDSLTRIY RLADLELSMN RLTGPIPASF GKMSVLATLN LDGNLISGMI PGSLLASSIS NLNLSGNLIT GSIPNTFGPR
301: SYFTVLDLAN NRLQGPIPAS ITAASFIGHL DVSHNHLCGK IPMGSPFDHL DATSFAYNAC LCGKPLGNCK K

Arabidopsis Description

Leucine-rich repeat (LRR) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LXU5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.